hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-12090682/chunk_1/iprscan-20080812-12090682.nocrc
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Query sequence: hh13729
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 185.9    3.8e-51   1
SM00220                                                  31.5    1.4e-11   1
SM00409                                                  47.4    1.8e-09   1
SM00082                                                  46.8    2.9e-09   1
SM00408                                                  39.1    5.9e-07   1
SM00013                                                  36.7    3.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00013    1/1      77   111 ..     1    38 []    36.7  3.1e-06
SM00082    1/1     194   241 ..     1    55 []    46.8  2.9e-09
SM00409    1/1     249   330 ..     1    58 []    47.4  1.8e-09
SM00408    1/1     255   319 ..     1    56 []    39.1  5.9e-07
SM00219    1/1     584   780 ..     1   280 []   185.9  3.8e-51
SM00220    1/1     584   781 .]     1   231 []    31.5  1.4e-11

Alignments of top-scoring domains:
SM00013: domain 1 of 1, from 77 to 111: score 36.7, E = 3.1e-06
                   *->qCPapCtCspdfgtaVdCsgrgLttlevPldlPadttl<-*
                      +CP +C+Cs   +++++Cs+++ +++++P+  P+ ++    
     hh13729    77    ACPTSCKCS---ASRIWCSDPSPGIVAFPRLEPNSVDP    111  

SM00082: domain 1 of 1, from 194 to 241: score 46.8, E = 2.9e-09
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      NPf C+C+++w+++++ea   +  +d + +l+C + +s +  pl+ l
     hh13729   194    NPFTCSCDIMWIKTLQEA---KSSPDTQ-DLYCLNESSKNI-PLANL 235  

                   lpsefsCp<-*
                   +     C+   
     hh13729   236 Q--IPNCG    241  

SM00409: domain 1 of 1, from 249 to 330: score 47.4, E = 1.8e-09
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       p++tv eG s+tL+C++++++ ++++W  ++  +++ + +++++++
     hh13729   249    APnLTVEEGKSITLSCsVAgdpvpNMYWDvgnlvskhmnetshtqgs 295  

                   LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   L+I+n++ +Ds  g    C+a++  g+++   +++LtV+   
     hh13729   296 LRItNISSDDS--GKQISCVAEnlVGEDQD--SVNLTVH    330  

SM00408: domain 1 of 1, from 255 to 319: score 39.1, E = 5.9e-07
                   *->leGqsVtLtCpasgdpvpnItWlk....gkplp....sgstLtiknv
                      +eG s+tL C ++gdpvpn  W  ++  +k++++++++ ++L+i+n+
     hh13729   255    EEGKSITLSCSVAGDPVPNMYWDVgnlvSKHMNetshTQGSLRITNI 301  

                   sleDsGl.YtCvArNsvg<-*
                   s +DsG++ +CvA+N vg   
     hh13729   302 SSDDSGKqISCVAENLVG    319  

SM00219: domain 1 of 1, from 584 to 780: score 185.9, E = 3.8e-51
                   *->ltlgkkLGeGaFGeVykGtlk........ieVAVKtLkeda...kee
                      ++l+++LGeGaFG+V++++ ++  +++++i VAVKtLk+ +++ +++
     hh13729   584    IVLKRELGEGAFGKVFLAECYnlcpeqdkILVAVKTLKDASdnaRKD 630  

                   FlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdL
                   F+rEa+++++l  +H++iVk++Gvc+e+       +Pl +v+Eym++GdL
     hh13729   631 FHREAELLTNL--QHEHIVKFYGVCVEG-------DPLIMVFEYMKHGDL 671  

                   ldyLrknrpk............lslsdLlsfAlQIAkGMeYLesknfvHR
                   +++Lr+++p+     +++++++l+ s++l++A QIA+GM YL+s++fvHR
     hh13729   672 NKFLRAHGPDavlmaegnppteLTQSQMLHIAQQIAAGMVYLASQHFVHR 721  

                   DLAARNcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktl
                   DLA+RNcLvgen+ vKI+DFG+sRd+y+        dyYr+++  +++  
     hh13729   722 DLATRNCLVGENLLVKIGDFGMSRDVYST-------DYYRVSS--CAD-- 760  

                   lPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsn
                                                       + P           
     hh13729   761 ------------------------------------QRPQGP-------- 766  

                   eevleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFs
                               l   +        +C                       
     hh13729   767 ------------LSLRDP-------CC----------------------- 774  

                   elverl<-*
                    +  rl   
     hh13729   775 ICLLRL    780  

SM00220: domain 1 of 1, from 584 to 781: score 31.5, E = 1.4e-11
                   *->YellkklGkGaFGkVylardkk.....tgrlvAiKvik.......er
                        l ++lG+GaFGkV+la   +  +++++ lvA+K +k+ +++ +++
     hh13729   584    IVLKRELGEGAFGKVFLAECYNlcpeqDKILVAVKTLKdasdnarKD 630  

                   ilrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkr
                   + rE ++L + +H++IVk+y+v++++d l +V+Ey+ +  GdL ++l+ +
     hh13729   631 FHREAELLTNlQHEHIVKFYGVCVEgDPLIMVFEYMKH--GDLNKFLRAH 678  

                   gr.........rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPe
                   g++     ++++++   l+ ++  ++++Qi+ ++ YL sq+++HRDL   
     hh13729   679 GPdavlmaegnPPTE--LTQsQMLHIAQQIAAGMVYLASQHFVHRDLATR 726  

                   NiLLds..hvKlaDFGlArqlttfvGTpeYmAPEvlgYgkpavDiWSlGc
                   N L+ ++  vK++DFG++r +                Y++          
     hh13729   727 NCLVGEnlLVKIGDFGMSRDV----------------YST---------- 750  

                   ilyElltGkpPFpqldlifkkig........SpeakdLikklLvkdPekR
                                     +++    + ++ ++ +++d  + +L +     
     hh13729   751 ----------------DYYRVSScadqrpqgPLSLRDPCCICLLR----- 779  

                   ltaeaLedeldikaHPff<-*
                        L               
     hh13729   780 -----LS-----------    781  

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