hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-12212990/chunk_1/iprscan-20080812-12212990.nocrc
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Query sequence: hh13745
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02854.9.ls MIF4G domain                                   253.3    4.6e-73   1
PF02854.9.fs MIF4G domain                                   251.4    1.7e-72   1
PF02847.7.fs MA3 domain                                     154.4    6.3e-46   1
PF02847.7.ls MA3 domain                                     156.3    7.1e-44   1
PF02020.8.fs eIF4-gamma/eIF5/eIF2-epsilon                   120.7    4.7e-36   1
PF02020.8.ls eIF4-gamma/eIF5/eIF2-epsilon                   122.6      1e-33   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02854.9.ls   1/1     950  1178 ..     1   230 []   253.3  4.6e-73
PF02854.9.fs   1/1     950  1178 ..     1   230 []   251.4  1.7e-72
PF02847.7.fs   1/1    1417  1529 ..     1   116 []   154.4  6.3e-46
PF02847.7.ls   1/1    1417  1529 ..     1   116 []   156.3  7.1e-44
PF02020.8.fs   1/1    1699  1780 .]     1    87 []   120.7  4.7e-36
PF02020.8.ls   1/1    1699  1780 .]     1    87 []   122.6    1e-33

Alignments of top-scoring domains:
PF02854.9.ls: domain 1 of 1, from 950 to 1178: score 253.3, E = 4.6e-73
                   *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl
                      ++kv+++lnkL+  p++f +++k+ + l +++        +e lk +
     hh13745   950    FRKVRSILNKLT--PQMFNqLMKQVSGLTVDT--------EERLKGV 986  

                   lelifekaveepnfipayArLcalLnsknp......gekteFgslllnrl
                   ++l+feka++ep+f+ ayA++c+ L ++  +  +++g+  +F++lllnr+
     hh13745   987 IDLVFEKAIDEPSFSVAYANMCRCLVTLKVpmadkpGNTVNFRKLLLNRC 1036 

                   qeeFekr........................eleaeleeeersdrkrrlg
                   q+eFek++ +++  ++++++ +  + ++++++l++elee ++++r+r +g
     hh13745  1037 QKEFEKDkadddvfekkqkeleaasapeertRLHDELEEAKDKARRRSIG 1086 

                   lvrFlgELynfqvltekiileilkelledlteedlqdqvrdeesleclll
                   +++F+gEL+++++lte+i+++++ +ll++++e          eslecl++
     hh13745  1087 NIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE----------ESLECLCR 1126 

                   lLetiGklLdnsekskklmdeilerlqkillkrdkshvrvesepelssri
                   lL+tiGk+Ld +ek+k++md+++ +++ki+++            + ssri
     hh13745  1127 LLTTIGKDLD-FEKAKPRMDQYFNQMEKIVKE-----------RKTSSRI 1164 

                   rfmledlielrknk<-*
                   rfml+d+i+lr  +   
     hh13745  1165 RFMLQDVIDLRLCN    1178 

PF02854.9.fs: domain 1 of 1, from 950 to 1178: score 251.4, E = 1.7e-72
                   *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl
                      ++kv+++lnkL+  p++f +++k+ + l +++        +e lk +
     hh13745   950    FRKVRSILNKLT--PQMFNqLMKQVSGLTVDT--------EERLKGV 986  

                   lelifekaveepnfipayArLcalLnsknp......gekteFgslllnrl
                   ++l+feka++ep+f+ ayA++c+ L ++  +  +++g+  +F++lllnr+
     hh13745   987 IDLVFEKAIDEPSFSVAYANMCRCLVTLKVpmadkpGNTVNFRKLLLNRC 1036 

                   qeeFekr........................eleaeleeeersdrkrrlg
                   q+eFek++ +++  ++++++ +  + ++++++l++elee ++++r+r +g
     hh13745  1037 QKEFEKDkadddvfekkqkeleaasapeertRLHDELEEAKDKARRRSIG 1086 

                   lvrFlgELynfqvltekiileilkelledlteedlqdqvrdeesleclll
                   +++F+gEL+++++lte+i+++++ +ll++++e          eslecl++
     hh13745  1087 NIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE----------ESLECLCR 1126 

                   lLetiGklLdnsekskklmdeilerlqkillkrdkshvrvesepelssri
                   lL+tiGk+Ld +ek+k++md+++ +++ki+++            + ssri
     hh13745  1127 LLTTIGKDLD-FEKAKPRMDQYFNQMEKIVKE-----------RKTSSRI 1164 

                   rfmledlielrknk<-*
                   rfml+d+i+lr  +   
     hh13745  1165 RFMLQDVIDLRLCN    1178 

PF02847.7.fs: domain 1 of 1, from 1417 to 1529: score 154.4, E = 6.3e-46
                   *->lkkkiflileEYlssGDtdEAarclleLglpeefhhevVkelivlal
                      l++k ++i++E+l+++D++EA++c++eL+   ++ h +V+++++++l
     hh13745  1417    LERKSKSIIDEFLHINDFKEAMQCVEELNAQ-GLLHVFVRVGVESTL 1462 

                   eeSvkktyremyskLLsrlcqknvistkqfekGFsrllesleDlalDiPd
                   e+  ++++r+++++LL +l q++++s+++f kGFs++le ++D+a+DiP+
     hh13745  1463 ER--SQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPH 1510 

                   alrnLaeFvarlisdgiLp<-*
                    +++Lae+v++++++g+++   
     hh13745  1511 IWLYLAELVTPMLKEGGIS    1529 

PF02847.7.ls: domain 1 of 1, from 1417 to 1529: score 156.3, E = 7.1e-44
                   *->lkkkiflileEYlssGDtdEAarclleLglpeefhhevVkelivlal
                      l++k ++i++E+l+++D++EA++c++eL+   ++ h +V+++++++l
     hh13745  1417    LERKSKSIIDEFLHINDFKEAMQCVEELNAQ-GLLHVFVRVGVESTL 1462 

                   eeSvkktyremyskLLsrlcqknvistkqfekGFsrllesleDlalDiPd
                   e+  ++++r+++++LL +l q++++s+++f kGFs++le ++D+a+DiP+
     hh13745  1463 ER--SQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPH 1510 

                   alrnLaeFvarlisdgiLp<-*
                    +++Lae+v++++++g+++   
     hh13745  1511 IWLYLAELVTPMLKEGGIS    1529 

PF02020.8.fs: domain 1 of 1, from 1699 to 1780: score 120.7, E = 4.7e-36
                   *->eeeqidlLlalEefcveleeelvikllakilvslYDaDileEeaIlk
                      +e+++++L+al++++v+l +++ ++ll++++++lYD+++++E+a++k
     hh13745  1699    TEKELQALYALQASIVKL-DQP-ANLLRMFFDCLYDEEVISEDAFYK 1743 

                   WyekadsadeskEgkkkvrkqakkFvtWLkeAeEEEseed<-*
                   W++++d+a+++  gk++++k++++F+tWL +++EEEse++   
     hh13745  1744 WESSKDPAEQN--GKGVALKSVTAFFTWL-REAEEESEDN    1780 

PF02020.8.ls: domain 1 of 1, from 1699 to 1780: score 122.6, E = 1e-33
                   *->eeeqidlLlalEefcveleeelvikllakilvslYDaDileEeaIlk
                      +e+++++L+al++++v+l +++ ++ll++++++lYD+++++E+a++k
     hh13745  1699    TEKELQALYALQASIVKL-DQP-ANLLRMFFDCLYDEEVISEDAFYK 1743 

                   WyekadsadeskEgkkkvrkqakkFvtWLkeAeEEEseed<-*
                   W++++d+a+++  gk++++k++++F+tWL +++EEEse++   
     hh13745  1744 WESSKDPAEQN--GKGVALKSVTAFFTWL-REAEEESEDN    1780 

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