hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-12212990/chunk_1/iprscan-20080812-12212990.nocrc
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Query sequence: hh13745
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00543                                                 234.2    1.1e-65   1
SM00544                                                 152.3    5.1e-41   1
SM00515                                                 135.2    6.9e-36   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00543    1/1     950  1178 ..     1   227 []   234.2  1.1e-65
SM00544    1/1    1417  1529 ..     1   117 []   152.3  5.1e-41
SM00515    1/1    1689  1776 ..     1    92 []   135.2  6.9e-36

Alignments of top-scoring domains:
SM00543: domain 1 of 1, from 950 to 1178: score 234.2, E = 1.1e-65
                   *->ekkvnglinkLspdnfeslikellklnndlleeeDPnendkellkel
                       +kv++++nkL+p++f +l+k+ + l  d+          +e lk +
     hh13745   950    FRKVRSILNKLTPQMFNQLMKQVSGLTVDT----------EERLKGV 986  

                   ielifekaveepglqDklnfipayArLcalLnaknp..........dFgs
                   i+l+feka++ep      +f+ ayA++c++L ++  +  ++++++ +F++
     hh13745   987 IDLVFEKAIDEP------SFSVAYANMCRCLVTLKVpmadkpgntvNFRK 1030 

                   llldrlqeeFekrkdd.eekek.lepkQvi..c.daeee.ele.eleeee
                   lll+r+q+eFek+k d++++ek++++   ++ ++ +ee+++l +elee +
     hh13745  1031 LLLNRCQKEFEKDKADdDVFEKkQKE---LeaAsAPEERtRLHdELEEAK 1077 

                   eknrkrrlglvrFlgELynfqvltskiilellkelledltefslecllsl
                    k+r+r +g+++F+gEL+++++lt+ i+++++ +ll++++e+slecl++l
     hh13745  1078 DKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRL 1127 

                   LetcGkdLe.ekspklldellerlqdill...lsprlrfmledlielrkn
                   L+t+GkdL+ ek++ ++d+++ ++++i+++++ s+r+rfml+d+i+lr  
     hh13745  1128 LTTIGKDLDfEKAKPRMDQYFNQMEKIVKerkTSSRIRFMLQDVIDLRLC 1177 

                   k<-*
                   +   
     hh13745  1178 N    1178 

SM00544: domain 1 of 1, from 1417 to 1529: score 152.3, E = 5.1e-41
                   *->lkkkifliikEylssgDtdEAvhclleLklpeefhhevvkvlltlaL
                      l++k ++ii+E l+++D++EA++c++eL++  +++h +v+v ++++L
     hh13745  1417    LERKSKSIIDEFLHINDFKEAMQCVEELNAQ-GLLHVFVRVGVESTL 1462 

                   eeatvkrtyremysvLLsrlcqanvistkqfekgFwrllesleDlelDiP
                   e+   ++ +r+++++LL +l q +++s+++f kgF+++le ++D+++DiP
     hh13745  1463 ER---SQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIP 1509 

                   dalrnLaeFlarlisdgiLp<-*
                   +++++Lae++++++++g+++   
     hh13745  1510 HIWLYLAELVTPMLKEGGIS    1529 

SM00515: domain 1 of 1, from 1689 to 1776: score 135.2, E = 6.9e-36
                   *->gpllkfllkdeeeqlelLyaiEefcvelekellkllpkilksLYDeD
                      ++llk+l++d e +l++Lya+++ +v+l++ +++ll++++++LYDe+
     hh13745  1689    PILLKYLDSDTEKELQALYALQASIVKLDQ-PANLLRMFFDCLYDEE 1734 

                   vleEeaIlkWyekkSKkyvsaeekskvrknakpqFvtWLqeAEEE<-*
                   v++E+a++kW+++k  +++++++k++++k++++ F+tWL+eAEEE   
     hh13745  1735 VISEDAFYKWESSK--DPAEQNGKGVALKSVTA-FFTWLREAEEE    1776 

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