hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-15261613/chunk_1/iprscan-20090618-15261613.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh14180 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00515.18.ls Tetratricopeptide repeat 419.1 5.7e-123 12 PF00515.18.fs Tetratricopeptide repeat 400.0 3.2e-117 12 PF07719.7.ls Tetratricopeptide repeat 345.4 8.6e-101 12 PF07719.7.fs Tetratricopeptide repeat 321.4 1.5e-93 12 PF07721.5.ls Tetratricopeptide repeat 81.4 2.6e-21 9 PF07721.5.fs Tetratricopeptide repeat 66.4 1.5e-17 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07719.7.fs 2/12 133 166 .. 1 34 [] 41.2 1.7e-10 PF00515.18.fs 1/12 133 166 .. 1 34 [] 48.9 6.6e-13 PF07719.7.ls 2/12 133 166 .. 1 34 [] 43.2 8.3e-10 PF00515.18.ls 2/12 133 166 .. 1 34 [] 50.9 4e-12 PF00515.18.fs 2/12 167 200 .. 1 34 [] 23.9 8.4e-06 PF00515.18.ls 3/12 167 200 .. 1 34 [] 25.9 0.00013 PF07719.7.ls 3/12 167 200 .. 1 34 [] 23.4 0.00075 PF07719.7.ls 4/12 201 234 .. 1 34 [] 23.8 0.00056 PF00515.18.fs 3/12 201 234 .. 1 34 [] 28.9 3.1e-07 PF00515.18.ls 4/12 201 234 .. 1 34 [] 31.0 4e-06 PF07719.7.ls 5/12 235 268 .. 1 34 [] 20.4 0.0059 PF00515.18.ls 5/12 235 268 .. 1 34 [] 40.0 7.5e-09 PF00515.18.fs 4/12 235 268 .. 1 34 [] 38.0 8.2e-10 PF00515.18.fs 5/12 269 302 .. 1 34 [] 29.7 1.9e-07 PF07719.7.fs 6/12 269 302 .. 1 34 [] 27.5 1.2e-06 PF07719.7.ls 6/12 269 302 .. 1 34 [] 29.5 1.1e-05 PF00515.18.ls 6/12 269 302 .. 1 34 [] 31.7 2.3e-06 PF07719.7.fs 7/12 303 336 .. 1 34 [] 27.2 1.4e-06 PF07719.7.ls 7/12 303 336 .. 1 34 [] 29.2 1.4e-05 PF00515.18.ls 7/12 303 336 .. 1 34 [] 38.8 1.8e-08 PF00515.18.fs 6/12 303 336 .. 1 34 [] 36.8 1.8e-09 PF07719.7.ls 8/12 337 370 .. 1 34 [] 34.5 3.5e-07 PF00515.18.ls 8/12 337 370 .. 1 34 [] 39.7 9.4e-09 PF07719.7.fs 8/12 337 370 .. 1 34 [] 32.5 4.6e-08 PF00515.18.fs 7/12 337 370 .. 1 34 [] 37.7 1e-09 PF00515.18.fs 8/12 371 404 .. 1 34 [] 38.0 8.3e-10 PF00515.18.ls 9/12 371 404 .. 1 34 [] 40.0 7.6e-09 PF07719.7.fs 9/12 371 404 .. 1 34 [] 32.4 4.9e-08 PF07719.7.ls 9/12 371 404 .. 1 34 [] 34.4 3.7e-07 PF00515.18.fs 9/12 405 438 .. 1 34 [] 37.8 9.1e-10 PF07719.7.fs 10/12 405 438 .. 1 34 [] 29.3 3.5e-07 PF07719.7.ls 10/12 405 438 .. 1 34 [] 31.3 3.1e-06 PF00515.18.ls 10/12 405 438 .. 1 34 [] 39.9 8.4e-09 PF07719.7.ls 11/12 439 472 .. 1 34 [] 32.4 1.4e-06 PF00515.18.ls 11/12 439 472 .. 1 34 [] 41.2 3.2e-09 PF00515.18.fs 10/12 439 472 .. 1 34 [] 39.2 3.7e-10 PF07719.7.fs 11/12 439 472 .. 1 34 [] 30.4 1.7e-07 PF00515.18.ls 12/12 473 506 .. 1 34 [] 38.3 2.5e-08 PF07719.7.ls 12/12 473 506 .. 1 34 [] 33.5 7.1e-07 PF07719.7.fs 12/12 473 506 .. 1 34 [] 31.4 8.9e-08 PF00515.18.fs 11/12 473 506 .. 1 34 [] 36.3 2.6e-09 Alignments of top-scoring domains: PF07719.7.fs: domain 2 of 12, from 133 to 166: score 41.2, E = 1.7e-10 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* aea+ nlG++y ++g+++eA+e+y+ Al+l P+ hh14180 133 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 166 PF00515.18.fs: domain 1 of 12, from 133 to 166: score 48.9, E = 6.6e-13 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* aeay nlGn+y ++g+++eAie+y+ AL+l P++ hh14180 133 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 166 PF07719.7.ls: domain 2 of 12, from 133 to 166: score 43.2, E = 8.3e-10 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* aea+ nlG++y ++g+++eA+e+y+ Al+l P+ hh14180 133 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 166 PF00515.18.ls: domain 2 of 12, from 133 to 166: score 50.9, E = 4e-12 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* aeay nlGn+y ++g+++eAie+y+ AL+l P++ hh14180 133 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 166 PF00515.18.fs: domain 2 of 12, from 167 to 200: score 23.9, E = 8.4e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y nl++a+ + g+ + A++ay AL+ +P+ hh14180 167 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 200 PF00515.18.ls: domain 3 of 12, from 167 to 200: score 25.9, E = 0.00013 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y nl++a+ + g+ + A++ay AL+ +P+ hh14180 167 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 200 PF07719.7.ls: domain 3 of 12, from 167 to 200: score 23.4, E = 0.00075 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +++ nl+ a+ ++gd e A++ay Al+++P+ hh14180 167 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 200 PF07719.7.ls: domain 4 of 12, from 201 to 234: score 23.8, E = 0.00056 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* + lG+++ +lg++eeA+++y kA+e Pn hh14180 201 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 234 PF00515.18.fs: domain 3 of 12, from 201 to 234: score 28.9, E = 3.1e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + lGn++ +lg+++eA ++y kA+e +Pn+ hh14180 201 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 234 PF00515.18.ls: domain 4 of 12, from 201 to 234: score 31.0, E = 4e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + lGn++ +lg+++eA ++y kA+e +Pn+ hh14180 201 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 234 PF07719.7.ls: domain 5 of 12, from 235 to 268: score 20.4, E = 0.0059 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a a+ nlG++ ++g+ A++++ekA+ ldPn hh14180 235 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 268 PF00515.18.ls: domain 5 of 12, from 235 to 268: score 40.0, E = 7.5e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a+ nlG ++ ++g+ Ai ++ekA+ ldPn+ hh14180 235 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 268 PF00515.18.fs: domain 4 of 12, from 235 to 268: score 38.0, E = 8.2e-10 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a+ nlG ++ ++g+ Ai ++ekA+ ldPn+ hh14180 235 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 268 PF00515.18.fs: domain 5 of 12, from 269 to 302: score 29.7, E = 1.9e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +ay nlGn++ + +d A++ay +AL+l Pn+ hh14180 269 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 302 PF07719.7.fs: domain 6 of 12, from 269 to 302: score 27.5, E = 1.2e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +a+ nlG+++ +++ +++A++ay +Al+l Pn+ hh14180 269 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 302 PF07719.7.ls: domain 6 of 12, from 269 to 302: score 29.5, E = 1.1e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +a+ nlG+++ +++ +++A++ay +Al+l Pn+ hh14180 269 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 302 PF00515.18.ls: domain 6 of 12, from 269 to 302: score 31.7, E = 2.3e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +ay nlGn++ + +d A++ay +AL+l Pn+ hh14180 269 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 302 PF07719.7.fs: domain 7 of 12, from 303 to 336: score 27.2, E = 1.4e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a ++ nl+++yy++g + A++ y++A+el P+ hh14180 303 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 336 PF07719.7.ls: domain 7 of 12, from 303 to 336: score 29.2, E = 1.4e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a ++ nl+++yy++g + A++ y++A+el P+ hh14180 303 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 336 PF00515.18.ls: domain 7 of 12, from 303 to 336: score 38.8, E = 1.8e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a ++ nl+ +y+++g d Ai+ y++A+el+P++ hh14180 303 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 336 PF00515.18.fs: domain 6 of 12, from 303 to 336: score 36.8, E = 1.8e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a ++ nl+ +y+++g d Ai+ y++A+el+P++ hh14180 303 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 336 PF07719.7.ls: domain 8 of 12, from 337 to 370: score 34.5, E = 3.5e-07 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ++a++nl++a+ ++g +eA+++y+ Al+l P++ hh14180 337 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 370 PF00515.18.ls: domain 8 of 12, from 337 to 370: score 39.7, E = 9.4e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ay+nl+na+ ++g eA+++y+ AL+l P++ hh14180 337 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 370 PF07719.7.fs: domain 8 of 12, from 337 to 370: score 32.5, E = 4.6e-08 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ++a++nl++a+ ++g +eA+++y+ Al+l P++ hh14180 337 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 370 PF00515.18.fs: domain 7 of 12, from 337 to 370: score 37.7, E = 1e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ay+nl+na+ ++g eA+++y+ AL+l P++ hh14180 337 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 370 PF00515.18.fs: domain 8 of 12, from 371 to 404: score 38.0, E = 8.3e-10 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ ++nl+n+ +++g+ +eA+ y+kALe+ P++ hh14180 371 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 404 PF00515.18.ls: domain 9 of 12, from 371 to 404: score 40.0, E = 7.6e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ ++nl+n+ +++g+ +eA+ y+kALe+ P++ hh14180 371 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 404 PF07719.7.fs: domain 9 of 12, from 371 to 404: score 32.4, E = 4.9e-08 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+ l+nl+++ +++g+ eeA+++y+kAle +P+ hh14180 371 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 404 PF07719.7.ls: domain 9 of 12, from 371 to 404: score 34.4, E = 3.7e-07 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+ l+nl+++ +++g+ eeA+++y+kAle +P+ hh14180 371 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 404 PF00515.18.fs: domain 9 of 12, from 405 to 438: score 37.8, E = 9.1e-10 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a+ nl+ ++ ++gk++eA+ +y++A+++ P++ hh14180 405 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 438 PF07719.7.fs: domain 10 of 12, from 405 to 438: score 29.3, E = 3.5e-07 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+a+ nl+ ++ ++g+++eAl +y++A+++ P+ hh14180 405 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 438 PF07719.7.ls: domain 10 of 12, from 405 to 438: score 31.3, E = 3.1e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+a+ nl+ ++ ++g+++eAl +y++A+++ P+ hh14180 405 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 438 PF00515.18.ls: domain 10 of 12, from 405 to 438: score 39.9, E = 8.4e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a+ nl+ ++ ++gk++eA+ +y++A+++ P++ hh14180 405 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 438 PF07719.7.ls: domain 11 of 12, from 439 to 472: score 32.4, E = 1.4e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+a+ n+G+ + +++d + Al++y +A++++P hh14180 439 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 472 PF00515.18.ls: domain 11 of 12, from 439 to 472: score 41.2, E = 3.2e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ay n+Gn++ ++++ + A+++y++A++++P + hh14180 439 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 472 PF00515.18.fs: domain 10 of 12, from 439 to 472: score 39.2, E = 3.7e-10 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ay n+Gn++ ++++ + A+++y++A++++P + hh14180 439 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 472 PF07719.7.fs: domain 11 of 12, from 439 to 472: score 30.4, E = 1.7e-07 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+a+ n+G+ + +++d + Al++y +A++++P hh14180 439 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 472 PF00515.18.ls: domain 12 of 12, from 473 to 506: score 38.3, E = 2.5e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+a+ nl+ ++ g+ eAi+ y+ AL+l P++ hh14180 473 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 506 PF07719.7.ls: domain 12 of 12, from 473 to 506: score 33.5, E = 7.1e-07 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+a+ nl+ ++ g+ eA++ y+ Al+l P+ hh14180 473 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 506 PF07719.7.fs: domain 12 of 12, from 473 to 506: score 31.4, E = 8.9e-08 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+a+ nl+ ++ g+ eA++ y+ Al+l P+ hh14180 473 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 506 PF00515.18.fs: domain 11 of 12, from 473 to 506: score 36.3, E = 2.6e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+a+ nl+ ++ g+ eAi+ y+ AL+l P++ hh14180 473 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 506 //