hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-15261613/chunk_1/iprscan-20090618-15261613.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh14180 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00028 404.0 8.3e-117 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00028 1/12 65 98 .. 1 34 [] 4.1 1.7e+02 SM00028 2/12 133 166 .. 1 34 [] 48.4 9.7e-10 SM00028 3/12 167 200 .. 1 34 [] 24.5 0.015 SM00028 4/12 201 234 .. 1 34 [] 28.8 0.00073 SM00028 5/12 235 268 .. 1 34 [] 37.7 1.6e-06 SM00028 6/12 269 302 .. 1 34 [] 30.3 0.00027 SM00028 7/12 303 336 .. 1 34 [] 38.6 8.3e-07 SM00028 8/12 337 370 .. 1 34 [] 39.1 6e-07 SM00028 9/12 371 404 .. 1 34 [] 39.4 4.8e-07 SM00028 10/12 405 438 .. 1 34 [] 38.3 1e-06 SM00028 11/12 439 472 .. 1 34 [] 38.4 9.4e-07 SM00028 12/12 473 506 .. 1 34 [] 36.4 3.9e-06 Alignments of top-scoring domains: SM00028: domain 1 of 12, from 65 to 98: score 4.1, E = 1.7e+02 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* + l l++ ++ gd++ A+ ++ + + +P+n hh14180 65 STGLAELAHREYQAGDFEAAERHCMQLWRQEPDN 98 SM00028: domain 2 of 12, from 133 to 166: score 48.4, E = 9.7e-10 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* aea++nlGn+y +g+++eAie+y+ AL+l P++ hh14180 133 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 166 SM00028: domain 3 of 12, from 167 to 200: score 24.5, E = 0.015 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* ++ + nl+ a+ + gd + A+++y AL+ +P+ hh14180 167 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 200 SM00028: domain 4 of 12, from 201 to 234: score 28.8, E = 0.00073 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* + + + lGn++ +lg+++eA ++y kA+e +Pn+ hh14180 201 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 234 SM00028: domain 5 of 12, from 235 to 268: score 37.7, E = 1.6e-06 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a a++nlG ++ ++g++ Ai ++ekA++ldPn+ hh14180 235 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 268 SM00028: domain 6 of 12, from 269 to 302: score 30.3, E = 0.00027 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +a+ nlGn++ +d A+++y +AL+l Pn+ hh14180 269 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 302 SM00028: domain 7 of 12, from 303 to 336: score 38.6, E = 8.3e-07 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a ++ nl+ +y+ +g +d Ai+ y++A+el+P++ hh14180 303 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 336 SM00028: domain 8 of 12, from 337 to 370: score 39.1, E = 6e-07 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* ++a++nl+na+ +g +eA+++y+ AL+l P++ hh14180 337 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 370 SM00028: domain 9 of 12, from 371 to 404: score 39.4, E = 4.8e-07 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+ l+nl+n+ + +g+++eA+ y+kALe+ P++ hh14180 371 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 404 SM00028: domain 10 of 12, from 405 to 438: score 38.3, E = 1e-06 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a a++nl+ ++ ++g+++eA+ +y++A+++ P++ hh14180 405 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 438 SM00028: domain 11 of 12, from 439 to 472: score 38.4, E = 9.4e-07 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+a++n+Gn + + d + A+++y++A++++P + hh14180 439 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 472 SM00028: domain 12 of 12, from 473 to 506: score 36.4, E = 3.9e-06 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+a++nl+ ++ g++ eAi+ y+ AL+l P++ hh14180 473 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 506 //