hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-12401929/chunk_1/iprscan-20080812-12401929.nocrc
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Query sequence: hh15512
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05729.3.fs NACHT domain                                    47.1    1.1e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05729.3.fs   1/1       1    52 [.   147   205 .]    47.1  1.1e-13

Alignments of top-scoring domains:
PF05729.3.fs: domain 1 of 1, from 1 to 52: score 47.1, E = 1.1e-13
                   *->lrkkLLPgaslllTsRPdalrdwllrrgleepqearylevrgFseed
                      ++k++L++++ll+++R+++ rd  +rr+le+      le+++F++++
     hh15512     1    FKKNHLSRTCLLIAVRTNRARD--IRRYLETI-----LEIKAFPFYN 40   

                   rkeyvrkyfsde<-*
                   +++++rk fs+    
     hh15512    41 TVCILRKLFSHN    52   

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