hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-12463626/chunk_1/iprscan-20080812-12463626.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh15590 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01421.9.fs Reprolysin (M12B) family zinc metallo 317.5 2.2e-92 1 PF01421.9.ls Reprolysin (M12B) family zinc metallo 275.0 1.4e-79 1 PF08516.2.fs ADAM cysteine-rich 209.4 7.6e-60 2 PF08516.2.ls ADAM cysteine-rich 207.6 2.6e-59 1 PF01562.9.ls Reprolysin family propeptide 203.1 6.1e-58 1 PF01562.9.fs Reprolysin family propeptide 201.1 2.3e-57 1 PF00200.13.fs Disintegrin 129.4 9.6e-40 1 PF00200.13.ls Disintegrin 131.4 2.3e-36 1 PF07974.3.ls EGF-like domain 21.9 0.0022 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01562.9.ls 1/1 21 168 .. 1 165 [] 203.1 6.1e-58 PF01562.9.fs 1/1 21 168 .. 1 165 [] 201.1 2.3e-57 PF01421.9.ls 1/1 174 371 .. 1 203 [] 275.0 1.4e-79 PF01421.9.fs 1/1 206 371 .. 38 203 .] 317.5 2.2e-92 PF00200.13.fs 1/1 388 463 .. 1 80 [] 129.4 9.6e-40 PF00200.13.ls 1/1 388 463 .. 1 80 [] 131.4 2.3e-36 PF08516.2.fs 1/2 465 587 .. 1 118 [] 205.6 1.1e-58 PF08516.2.ls 1/1 465 587 .. 1 118 [] 207.6 2.6e-59 PF07974.3.ls 1/1 615 642 .. 1 37 [] 21.9 0.0022 Alignments of top-scoring domains: PF01562.9.ls: domain 1 of 1, from 21 to 168: score 203.1, E = 6.1e-58 *->lLlllllpglaglgaalgtpweyssyEvviPekltsegkrrvkqdld L+++ll+++ ++g +s++ + + ++ s+++r+ +dl+ hh15590 21 ALAGALLAPCEARG--------VSLWNQGRADEVVSASVRS--GDLW 57 irlkslkeekyeeelsYvlrieGkpyiLhLeknrgllapdftvttYdedG i++ks++ ++++e l ++l+ e+k++i++Le+n+gl+a+ ft+t+Y +dG hh15590 58 IPVKSFDSKNHPEVLNIRLQRESKELIINLERNEGLIASSFTETHYLQDG 107 tlvteepliqdhCyYqGyVeGypnSaVslSTCsGGLRGllqlenvsYgIE t+v++ ++ + hCyY+G+V+Gy++SaVslSTCs GLRGl+++en+sY +E hh15590 108 TDVSLARNYTGHCYYHGHVRGYSDSAVSLSTCS-GLRGLIVFENESYVLE 156 PlesssgfeAQrlPHiiY<-* P++ s++ + ++++ hh15590 157 PMK-SATNR-----YKLF 168 PF01562.9.fs: domain 1 of 1, from 21 to 168: score 201.1, E = 2.3e-57 *->lLlllllpglaglgaalgtpweyssyEvviPekltsegkrrvkqdld L+++ll+++ ++g +s++ + + ++ s+++r+ +dl+ hh15590 21 ALAGALLAPCEARG--------VSLWNQGRADEVVSASVRS--GDLW 57 irlkslkeekyeeelsYvlrieGkpyiLhLeknrgllapdftvttYdedG i++ks++ ++++e l ++l+ e+k++i++Le+n+gl+a+ ft+t+Y +dG hh15590 58 IPVKSFDSKNHPEVLNIRLQRESKELIINLERNEGLIASSFTETHYLQDG 107 tlvteepliqdhCyYqGyVeGypnSaVslSTCsGGLRGllqlenvsYgIE t+v++ ++ + hCyY+G+V+Gy++SaVslSTCs GLRGl+++en+sY +E hh15590 108 TDVSLARNYTGHCYYHGHVRGYSDSAVSLSTCS-GLRGLIVFENESYVLE 156 PlesssgfeAQrlPHiiY<-* P++ s++ + ++++ hh15590 157 PMK-SATNR-----YKLF 168 PF01421.9.ls: domain 1 of 1, from 174 to 371: score 275.0, E = 1.4e-79 *->rYiELvIVvDhgmytkygsdlnkirqrVhqiv.....NlvNeiYrpq + + gs++n+ + ++ +++++++ + +Yrp hh15590 174 ----------KSVRGSCGSHHNTPNLAAKNVFpppsqTWARRFYRP- 209 LNIrVvLvgLEIWsdgDkInvqsdandTLhsFgeWRetdLlkrksHDnAq LNIr+vLvg+E+W+d+Dk++v++d+ + Lh+F++WR+++Ll rksHDnAq hh15590 210 LNIRIVLVGVEVWNDMDKCSVSQDPFTSLHEFLDWRKMKLLPRKSHDNAQ 259 LLtgidfdgntiGaAyvggmCspkrSvGVvqdhspivllvAvtMAHELGH L++g+ f+g+tiG+A++++mC+++ S+G+v+dhs ++l+ Avt+AHELGH hh15590 260 LVSGVYFQGTTIGMAPIMSMCTADQSGGIVMDHSDNPLGAAVTLAHELGH 309 NLGmtHDdkntdgCtCe...gggsCIMnpvassspskKkFSnCSkddyqk N+Gm+HD+ ++ gC+C+ ++g+CIMn+++++++++ FS+CS++d+++ hh15590 310 NFGMNHDTLDR-GCSCQmavEKGGCIMNASTGYPFPM-VFSSCSRKDLET 357 FltkqkpqCLlNkP<-* l+k+++ CL+N P hh15590 358 SLEKGMGVCLFNLP 371 PF01421.9.fs: domain 1 of 1, from 206 to 371: score 317.5, E = 2.2e-92 *->iYrpqLNIrVvLvgLEIWsdgDkInvqsdandTLhsFgeWRetdLlk +Yrp LNIr+vLvg+E+W+d+Dk++v++d+ + Lh+F++WR+++Ll hh15590 206 FYRP-LNIRIVLVGVEVWNDMDKCSVSQDPFTSLHEFLDWRKMKLLP 251 rksHDnAqLLtgidfdgntiGaAyvggmCspkrSvGVvqdhspivllvAv rksHDnAqL++g+ f+g+tiG+A++++mC+++ S+G+v+dhs ++l+ Av hh15590 252 RKSHDNAQLVSGVYFQGTTIGMAPIMSMCTADQSGGIVMDHSDNPLGAAV 301 tMAHELGHNLGmtHDdkntdgCtCe...gggsCIMnpvassspskKkFSn t+AHELGHN+Gm+HD+ ++ gC+C+ ++g+CIMn+++++++++ FS+ hh15590 302 TLAHELGHNFGMNHDTLDR-GCSCQmavEKGGCIMNASTGYPFPM-VFSS 349 CSkddyqkFltkqkpqCLlNkP<-* CS++d+++ l+k+++ CL+N P hh15590 350 CSRKDLETSLEKGMGVCLFNLP 371 PF00200.13.fs: domain 1 of 1, from 388 to 463: score 129.4, E = 9.6e-40 *->EggEeCDCGspedCqnkdpCCdaktCkLkpGAqCsPsnGpCCknCqf E+gEeCDCG pe+C + CC+a+tC+Lkp A C+ +G+CC +Cq+ hh15590 388 EEGEECDCGEPEEC--MNRCCNATTCTLKPDAVCA--HGLCCEDCQL 430 kpkgtvCRpatgeCDlpeyCnGtSaeCPpdpyv<-* kp+gt CR++++ CDlpe+C+G S++CP+++y hh15590 431 KPAGTACRDSSNSCDLPEFCTGASPHCPANVYL 463 PF00200.13.ls: domain 1 of 1, from 388 to 463: score 131.4, E = 2.3e-36 *->EggEeCDCGspedCqnkdpCCdaktCkLkpGAqCsPsnGpCCknCqf E+gEeCDCG pe+C + CC+a+tC+Lkp A C+ +G+CC +Cq+ hh15590 388 EEGEECDCGEPEEC--MNRCCNATTCTLKPDAVCA--HGLCCEDCQL 430 kpkgtvCRpatgeCDlpeyCnGtSaeCPpdpyv<-* kp+gt CR++++ CDlpe+C+G S++CP+++y hh15590 431 KPAGTACRDSSNSCDLPEFCTGASPHCPANVYL 463 PF08516.2.fs: domain 1 of 2, from 465 to 587: score 205.6, E = 1.1e-58 *->DGtPCqnnqgYCYnGnCptrdqQCqelFGpgAkvApdsCYeelNskG DG++Cq+ +gYCYnG C+t++qQC +l+GpgAk+Ap +C+e++Ns G hh15590 465 DGHSCQDVDGYCYNGICQTHEQQCVTLWGPGAKPAPGICFERVNSAG 511 drfGNCGkesrngtyipCepqDvkCGkLqCtnvs.lpllgehatviytni d +GNCGk s ++++ +Ce++D+kCGk+qC+++ ++p++g +a i tni hh15590 512 DPYGNCGKVS-KSSFAKCEMRDAKCGKIQCQGGAsRPVIGTNAVSIETNI 560 .....ngvtCwgtdyhlgmddpDiGlV<-* + ++++ + C+gt+++lg+d+pD+GlV hh15590 561 plqqgGRILCRGTHVYLGDDMPDPGLV 587 PF08516.2.ls: domain 1 of 1, from 465 to 587: score 207.6, E = 2.6e-59 *->DGtPCqnnqgYCYnGnCptrdqQCqelFGpgAkvApdsCYeelNskG DG++Cq+ +gYCYnG C+t++qQC +l+GpgAk+Ap +C+e++Ns G hh15590 465 DGHSCQDVDGYCYNGICQTHEQQCVTLWGPGAKPAPGICFERVNSAG 511 drfGNCGkesrngtyipCepqDvkCGkLqCtnvs.lpllgehatviytni d +GNCGk s ++++ +Ce++D+kCGk+qC+++ ++p++g +a i tni hh15590 512 DPYGNCGKVS-KSSFAKCEMRDAKCGKIQCQGGAsRPVIGTNAVSIETNI 560 .....ngvtCwgtdyhlgmddpDiGlV<-* + ++++ + C+gt+++lg+d+pD+GlV hh15590 561 plqqgGRILCRGTHVYLGDDMPDPGLV 587 PF07974.3.ls: domain 1 of 1, from 615 to 642: score 21.9, E = 0.0022 *->C...CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C +C+g +G+C++ + C+C+ + + C hh15590 615 CamqCHG-RGVCNNRKN-------CHCEAH----WAPPFC 642 //