hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-12534783/chunk_1/iprscan-20080812-12534783.nocrc
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Query sequence: hh15786
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF02931.14.ls  Neurotransmitter-gated ion-channel lig   252.4    8.4e-73   1
PF02931.14.fs  Neurotransmitter-gated ion-channel lig   250.7    2.9e-72   1
PF02932.6.fs   Neurotransmitter-gated ion-channel tra   232.1    6.3e-70   1
PF02932.6.ls   Neurotransmitter-gated ion-channel tra   233.8    3.4e-67   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF02931.14.fs    1/1      57   263 ..     1   246 []   250.7  2.9e-72
PF02931.14.ls    1/1      57   263 ..     1   246 []   252.4  8.4e-73
PF02932.6.fs     1/1     270   490 ..     1   289 []   232.1  6.3e-70
PF02932.6.ls     1/1     270   490 ..     1   289 []   233.8  3.4e-67

Alignments of top-scoring domains:
PF02931.14.fs: domain 1 of 1, from 57 to 263: score 250.7, E = 2.9e-72
                   *->eerLlddLlennvsgYdkrvRPvengsdlppvtVsvglylqqiidVd
                       ++ +d+Ll++    Yd r+RP  +g++ p v V++++ + +i+ V+
     hh15786    57    VKETVDRLLKG----YDIRLRPD-FGGP-P-VAVGMNIDIASIDMVS 96   

                   EknqdlttnvwlrqqWtDerLaWdPedpDvlgdYggikslrlpsddEhdm
                   E+n+d+t+ ++++q W+D+rL+++            + +l+l+      +
     hh15786    97 EVNMDYTLTMYFQQAWRDKRLSYN-VI---------PLNLTLDNR----V 132  

                   lkkIWlPDivLyNsnadgnhdvttpntnvrvypgkkdGtVlwspPaiyks
                   ++++W+PD+++ N+++++ h+vt++n ++r++p   dGtVl+  +++ ++
     hh15786   133 ADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHP---DGTVLYGLRITTTA 179  

                   sCpidvtyFPFDqQnCslkFgSwtYngnevdLrwkddtp.vvekeeidLs
                   +C +d++ +P+D+QnC+l+++S++Y+++++ ++w+ d+  v    +i+L+
     hh15786   180 ACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNaVTGVTKIELP 229  

                   dFtengeWdildvpakrnekpygccseltsagLnlvYpditfylvlrRkp
                   +F + +   i+     ++  ++g++++l+             ++ l+R++
     hh15786   230 QFSIVDYKLITK----KVVFSTGSYPRLS------------LSFKLKRNI 263  

                   <-*
                      
     hh15786     -     -    

PF02931.14.ls: domain 1 of 1, from 57 to 263: score 252.4, E = 8.4e-73
                   *->eerLlddLlennvsgYdkrvRPvengsdlppvtVsvglylqqiidVd
                       ++ +d+Ll++    Yd r+RP  +g++ p v V++++ + +i+ V+
     hh15786    57    VKETVDRLLKG----YDIRLRPD-FGGP-P-VAVGMNIDIASIDMVS 96   

                   EknqdlttnvwlrqqWtDerLaWdPedpDvlgdYggikslrlpsddEhdm
                   E+n+d+t+ ++++q W+D+rL+++            + +l+l+      +
     hh15786    97 EVNMDYTLTMYFQQAWRDKRLSYN-VI---------PLNLTLDNR----V 132  

                   lkkIWlPDivLyNsnadgnhdvttpntnvrvypgkkdGtVlwspPaiyks
                   ++++W+PD+++ N+++++ h+vt++n ++r++p   dGtVl+  +++ ++
     hh15786   133 ADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHP---DGTVLYGLRITTTA 179  

                   sCpidvtyFPFDqQnCslkFgSwtYngnevdLrwkddtp.vvekeeidLs
                   +C +d++ +P+D+QnC+l+++S++Y+++++ ++w+ d+  v    +i+L+
     hh15786   180 ACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNaVTGVTKIELP 229  

                   dFtengeWdildvpakrnekpygccseltsagLnlvYpditfylvlrRkp
                   +F + +   i+     ++  ++g++++l+             ++ l+R++
     hh15786   230 QFSIVDYKLITK----KVVFSTGSYPRLS------------LSFKLKRNI 263  

                   <-*
                      
     hh15786     -     -    

PF02932.6.fs: domain 1 of 1, from 270 to 490: score 232.1, E = 6.3e-70
                   *->liiPCvLIsfLswLvFyLPsDaGPeKvtLgIsvLLtlTvFlllirei
                      +++P++LI++Lsw++F++++Da++++v+LgI+++Lt+T++ +++re+
     hh15786   270    TYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRET 316  

                   lPkTSlvvPLigkYllFtMfvvtasieyavvvlnvhhRsPkstHkmppwv
                   lPk+++v++++++++ +++fv++a++eya v++++++R+P++++k++++ 
     hh15786   317 LPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKA 366  

                   rklfLerklPrll.fmkrpneslsepnskrpllrrpgssssgaslkaeey
                    ++ +e+ + ++ +++ + n++ls+ ++k            + ++++e +
     hh15786   367 ASANNEKMRLDVNkMDPHENILLSTLEIK------------NEMATSEAV 404  

                   slskprselmfekgspeleeylcaHlqgardgldssgtakggrgkthpCk
                   ++ + + + m                     ++d s+             
     hh15786   405 MGLGDPRSTML--------------------AYDASS------------- 421  

                   cckskggpvgesggslsplslkrlspelkkaiegvsrfIaehvgpkaavk
                                      +++r++   + ++ g  +   +h     a k
     hh15786   422 -------------------IQYRKAGLPRHSF-GR-NALERH----VAQK 446  

                   a.wlrskdeddsvkedWkyvamvIDRlflwiFpivfvlGTlgyf<-*
                   +++lr++ ++ ++ +++++++++IDR+++++Fp+vf++++++y+   
     hh15786   447 KsRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYW    490  

PF02932.6.ls: domain 1 of 1, from 270 to 490: score 233.8, E = 3.4e-67
                   *->liiPCvLIsfLswLvFyLPsDaGPeKvtLgIsvLLtlTvFlllirei
                      +++P++LI++Lsw++F++++Da++++v+LgI+++Lt+T++ +++re+
     hh15786   270    TYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRET 316  

                   lPkTSlvvPLigkYllFtMfvvtasieyavvvlnvhhRsPkstHkmppwv
                   lPk+++v++++++++ +++fv++a++eya v++++++R+P++++k++++ 
     hh15786   317 LPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKA 366  

                   rklfLerklPrll.fmkrpneslsepnskrpllrrpgssssgaslkaeey
                    ++ +e+ + ++ +++ + n++ls+ ++k            + ++++e +
     hh15786   367 ASANNEKMRLDVNkMDPHENILLSTLEIK------------NEMATSEAV 404  

                   slskprselmfekgspeleeylcaHlqgardgldssgtakggrgkthpCk
                   ++ + + + m                     ++d s+             
     hh15786   405 MGLGDPRSTML--------------------AYDASS------------- 421  

                   cckskggpvgesggslsplslkrlspelkkaiegvsrfIaehvgpkaavk
                                      +++r++   + ++ g  +   +h     a k
     hh15786   422 -------------------IQYRKAGLPRHSF-GR-NALERH----VAQK 446  

                   a.wlrskdeddsvkedWkyvamvIDRlflwiFpivfvlGTlgyf<-*
                   +++lr++ ++ ++ +++++++++IDR+++++Fp+vf++++++y+   
     hh15786   447 KsRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYW    490  

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