hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-12534783/chunk_1/iprscan-20080812-12534783.nocrc
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Query sequence: hh15786
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00860 LIC: Cation transporter family protein         752.6     8e-224   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00860   1/1      22   493 ..     1   550 []   752.6   8e-224

Alignments of top-scoring domains:
TIGR00860: domain 1 of 1, from 22 to 493: score 752.6, E = 8e-224
                   *->Mwlvqil.slyllalllfaslaavslaefqaksnlkeveprrlldeL
                      Mw+v+ ++ ++ ++++l+++ ++++    +++sn++ v+  +++d+L
     hh15786    22    MWRVRKRgYFGIWSFPLIIAAVCAQSV--NDPSNMSLVK--ETVDRL 64   

                   LkggsGYdirvRPvgnnksWPDfggkPvtVsinlilaSIdsiDEvNMdYT
                   Lkg   Ydir+RP+        fgg+Pv V++n+++aSId+++EvNMdYT
     hh15786    65 LKG---YDIRLRPD--------FGGPPVAVGMNIDIASIDMVSEVNMDYT 103  

                   tniwlrqeWtDeRLqwnpeedsdtevypgvtlvrtpdgdfAesIWvPDif
                   ++++++q W+D+RL++n+++           l++t+d+++A+++WvPD++
     hh15786   104 LTMYFQQAWRDKRLSYNVIP-----------LNLTLDNRVADQLWVPDTY 142  

                   faNeKdarfhgitetNvlvRihpnGsvlYsiRltltlACpMDLknfPlDv
                   f N+K++++hg+t++N+++R+hp+G+vlY++R+t+t+AC+MDL+++PlD+
     hh15786   143 FLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDE 192  

                   QnCslefeSygYTtnDikleWkeqpgaVqvdeslfislPeFeLlgvygtr
                   QnC+le+eSygYTt+Di+++W ++ +aV+++ ++  +lP+F++++ y++ 
     hh15786   193 QNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKI--ELPQFSIVD-YKLI 239  

                   ycftsetntGeYpclklsfvLrRrilYYllqLYIPSillviLSwVSFWLp
                    + ++ ++tG+Yp+l+lsf+L+R+i+Y++lq+Y+PSil++iLSwVSFW++
     hh15786   240 TK-KVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWIN 288  

                   kDAsgARVsLGITtLLTMTTfssgvresLPavSdyvKAIDvYlvvClvFV
                   +DAs+ARV+LGITt+LTMTT+ +++re+LP+++ yvKAID Yl++C+vFV
     hh15786   289 YDASAARVALGITTVLTMTTINTHLRETLPKIP-YVKAIDMYLMGCFVFV 337  

                   flALLEyafVnyvhhkksaqkkPmPkWlrhlllercarrlckqepgedyr
                   f ALLEya+Vny++++ ++q+        ++  e++a+  +++ + +   
     hh15786   338 FMALLEYALVNYIFFGRGPQRQ-------KKAAEKAASANNEKMRLDVNK 380  

                   rpaldtaekrddlssvemrpkkggppsngnlLYIgnqgLegvHCPTpDSG
                    + ++++     ls++e++++              ++             
     hh15786   381 MDPHENIL----LSTLEIKNEMA-----------TSEAVM---------- 405  

                   VvCGklaCskterqallhsppPseaqytksystrhGYiPsvlRslalagi
                           + +++  ++  ++ s++qy+k    rh ++    R  + +++
     hh15786   406 --------GLGDPRSTMLAYDASSIQYRKAGLPRHSFG----RNALERHV 443  

                   leevRyIlhhlrkraeseevvrdwkfrakvIDklsrmaFplvfllFNily
                    ++ +    +lr+ra++ +++++++++++ ID++sr++Fp+vf+ FNi+y
     hh15786   444 AQKKS----RLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVY 489  

                   wtvY<-*
                   w++Y   
     hh15786   490 WLYY    493  

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