hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-13135609/chunk_1/iprscan-20080812-13135609.nocrc
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Query sequence: hj00087
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF01762.12.fs Galactosyltransferase                       52.0    1.8e-14   2
PF01762.12.ls Galactosyltransferase                       21.7      2e-08   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF01762.12.ls   1/1     218   385 ..     1   216 []    21.7    2e-08
PF01762.12.fs   1/2     241   306 ..    50   116 ..    22.8  3.5e-06
PF01762.12.fs   2/2     328   385 ..   150   216 .]    29.2  5.4e-08

Alignments of top-scoring domains:
PF01762.12.ls: domain 1 of 1, from 218 to 385: score 21.7, E = 2e-08
                   *->aRRnaiRkTWmnksnsrgvkdgrikslFlvGlsakgdgkvkklvmeE
                               +++++   +    +i+ l    + +  d  +k+    E
     hj00087   218    ---------SRPQRL--I---DHIRNL----HEE--DALLKE----E 240  

                   arrtlyGDivvvdleDtYlnLtfKTltlllyvvskapsakligKiDdDVm
                   +   +y Div+vd +DtY+n++ K l   ++ v+ ++ + l++K+DdD +
     hj00087   241 SS--IYDDIVFVDVVDTYRNVPAKLLNFYRWTVETTS-FNLLLKTDDDCY 287  

                   fnpdkLlslLdreniridps.elsfyGylfkegepvrnkkskrqrehWYv
                   ++ + + + ++++    + +++++  G    + +++r+ k          
     hj00087   288 IDLEAVFNRIVQK----NLDgPNFWWGNFRLNWAVDRTGKWQ-------- 325  

                   ppsaYkcsrHHWPNgnkYppYvsGpfYlltrdAAplilkaskhrnfitvE
                    + +Y+++         Yp+++ G +Y++++d ++ +  +s +++ ++ E
     hj00087   326 -ELEYPSPA--------YPAFACGSGYVISKDIVKWLASNSGRLKTYQGE 366  

                   DvliTGilAndlgisrkdlp<-*
                   Dv+  Gi++ ++g +r+++    
     hj00087   367 DVSM-GIWMAAIGPKRYQDS    385  

PF01762.12.fs: domain 1 of 2, from 241 to 306: score 22.8, E = 3.5e-06
                   *->rtlyGDivvvdleDtYlnLtfKTltlllyvvskapsakligKiDdDV
                      +++y Div+vd +DtY+n++ K l   ++ v+ ++ + l++K+DdD 
     hj00087   241    SSIYDDIVFVDVVDTYRNVPAKLLNFYRWTVETTS-FNLLLKTDDDC 286  

                   mfnpdkLlslLdreniridp<-*
                   +++ + + + ++++n ++++   
     hj00087   287 YIDLEAVFNRIVQKNLDGPN    306  

PF01762.12.fs: domain 2 of 2, from 328 to 385: score 29.2, E = 5.4e-08
                   *->aYkcsrHHWPNgnkYppYvsGpfYlltrdAAplilkaskhrnfitvE
                      +Y+++         Yp+++ G +Y++++d ++ +  +s +++ ++ E
     hj00087   328    EYPSPA--------YPAFACGSGYVISKDIVKWLASNSGRLKTYQGE 366  

                   DvliTGilAndlgisrkdlp<-*
                   Dv+  Gi++ ++g +r+++    
     hj00087   367 DVSM-GIWMAAIGPKRYQDS    385  

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