hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-13263511/chunk_1/iprscan-20080812-13263511.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj00278 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02460.9.fs Patched family 130.5 8.7e-37 2 PF02460.9.ls Patched family -44.6 3.2e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02460.9.ls 1/1 374 1264 .. 1 975 [] -44.6 3.2e-12 PF02460.9.fs 1/2 582 894 .. 217 627 .. 99.5 4.1e-28 PF02460.9.fs 2/2 1096 1264 .. 806 975 .] 31.0 5.5e-09 Alignments of top-scoring domains: PF02460.9.ls: domain 1 of 1, from 374 to 1264: score -44.6, E = 3.2e-12 *->llsldivytr...tpdDirksltergarsedeplkenkFfpgkskpe +s+++v++r ++ p+D+ s + +ar e+e+ + + f+ +e hj00278 374 ACSSGLVFVRvttNPVDLW-SAPSSQARLEKEYFDQH--FGPFFRTE 417 arfvnliitAkdrnsedytrpN........iLnpkyLnevvqvndyiltn + + +t k +p++ + + ++ L++ L+ v ++ + +++n hj00278 418 QLIIRAPLTDKHIYQ---PYPSgadvpfgpPLDIQILHQVLDL-QIAIEN 463 v..............................eipddgnkkisetykdlCs ++ + ++++ + ++ + ++ +++ + +++ ++n + + k+ + hj00278 464 ItasydnetvtlqdiclaplspyntnctilsVLNYFQNSHSVLDHKKGDD 513 ryCdlncpvnkhyngLdtKtRWGnFGPfaeLlsrrhnvdksrikltYPtm + ++ h+ +L + + n ++ l+ P hj00278 514 FF----VYADYHTHFL-----------YCVRAPASLN---DTSLLHDPCL 545 kvlgtpiYlgphfgGVkvdpsendvekllDsltklklvdtksetgnissa +++g p++ ++gG ++ + n a hj00278 546 GTFGGPVFPWLVLGG---YD-----------------------DQNYNNA 569 KaivLqy..rlkfdeeeveeyskewEdsLfdylenkyaseehiqitifsd a+v +++ + ++++e+ + + wE + +++n+ ++ ++i++ hj00278 570 TALVITFpvNNYYNDTEKLQRAQAWEKEFINFVKNYKNPN--LTISFTAE 617 syledElvrnaltlvPffvvgfaiLltFsiitsvKWtlssdrsgslmiDW +++edEl r ++ v v++ ai+++++++ ++ +s ++ hj00278 618 RSIEDELNRESDSDVFTVVISYAIMFLYISLA----LGHM-KSCRRLL-- 660 vssKpiLAilGclsPllAivsafGlLfwfGfpFnsIvc.VmPFLvLGAIG v sK++L i+G+l l + + ++G + +G p Iv +V+PFLvL A+G hj00278 661 VDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIeVIPFLVL-AVG 709 VDDmFlmvaaWqrttkslsetaRkekvnvEvkkRmgetlsEaGpsItITS VD+ F++v a qr ++ + + +g++l E++ps + +S hj00278 710 VDNIFILVQAYQRDERLQG-ET--------LDQQLGRVLGEVAPSMFLSS 750 lTnvlsFgiGiiTptPaIqlFClytavAvfFdFiYQiTFfaAvmaivakr + +F G+++ Pa+ F+l++++Avf dF+ QiT f+ ++ + kr hj00278 751 FSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKR 800 EmkgrhvlfvrRtFkaVdiakeespskLWLLGvardiqrissessrpvAP + k r f + +++++s++ hj00278 801 QEKNRLDIFCC-------------------------VRGAEDGTSVQ--- 822 veklkkkkSkfrkDadaesdKktiieEvaekaekssedsdssksheaeqK +e+ hj00278 823 ---------------------------------------------ASES- 826 dltsRGAmGrffleiYcpFllnpkvrlcvllvfvvYlaiaiYGcvnikeg + + rff ++Y+p+ll + r +v+ +fv+ l+++i +g hj00278 827 -CLF-----RFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIG 870 LdPdkLvveDSpLveilklrekffwpeGqqvqVfVnNPPdLtiNpenrdr Ld + ++DS+ v+++k + + ++ G +v + + d t + + hj00278 871 LDQSLSMPDDSYMVDYFKSI-SQYLHAGPPVYFVLEEGHDYTS-SKGQNM 918 l........nemvneFEst....pyslGkGWGEnsTkfWLreYenFlktS + ++ + +++++v+ + + ++y++ + + + W +Y + k hj00278 919 VcggmgcnnDSLVQQIFNAaqldNYTRIG----FAPSSWIDDYFDWVKP- 963 elemseeedeekaidddknvsvvvkdklewp...............syde ++s ++ i+d vv+++ + ++ +++++++++++++ + hj00278 964 --QSSCCRVDN--ITDQFCNASVVDPACVRCrpltpegkqrpqggdFMRF 1009 lewfLk...........wpgnslqWagdlvwdnpnksdkettelkkFrFt l+ fL ++++++ ++++ + +s a +++++ +t++ + F hj00278 1010 LPMFLSdnpnpkcgkggHAAYSS--AVNILLG-------HGTRVGATYFM 1050 taYHgkdlstwtdRtkllkewRsvADe...........ypeKFNVtvFde t l t +d ++lk R +A+ +++ + +++ y F +vF hj00278 1051 TY--HTVLQTSADFIDALKKARLIASNvtetmgingsaYRV-FPYSVF-- 1095 dspflDqlltilpttiqsiiialicMavVcflFIpnpitvfvitlaiaSI ++f q+lti+ +ti +++++l +++V +++ ++vi +a + + hj00278 1096 -YVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAM 1144 diG.VfGfLSlWGVdLDPIsMitiIMSIGFSVDfsAHIaYhfyrsrgses +++ fG + lWG+ L ++s ++++MS G SV+f +HI+ +f +s + hj00278 1145 VLVnMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKG-- 1192 qstpdeRvadALealGWPvfqaalST.iLcvlvLlfVdsYmvvvFfKTvv + eR+ +AL+ +G vf + + T++ +++vL+f s + ++F + hj00278 1193 --SRVERAEEALAHMGSSVFSGITLTkFGGIVVLAFAKSQIFQIFYFRMY 1240 LVvv.lGllHGLifLPiiLslfvt<-* L +v lG+ HGLifLP++Ls ++ hj00278 1241 LAMVlLGATHGLIFLPVLLSYIGP 1264 PF02460.9.fs: domain 1 of 2, from 582 to 894: score 99.5, E = 4.1e-28 *->fdeeeveeyskewEdsLfdylenkyaseehiqitifsdsyledElvr ++++e+ + + wE + +++n+ ++ ++i++ +++edEl r hj00278 582 YNDTEKLQRAQAWEKEFINFVKNYKNPN--LTISFTAERSIEDELNR 626 naltlvPffvvgfaiLltFsiitsvKWtlssdrsgslmiDWvssKpiLAi ++ v v++ ai+++++++ ++ +s ++ v sK++L i hj00278 627 ESDSDVFTVVISYAIMFLYISLA----LGHM-KSCRRLL--VDSKVSLGI 669 lGclsPllAivsafGlLfwfGfpFnsIvc.VmPFLvLGAIGVDDmFlmva +G+l l + + ++G + +G p Iv +V+PFLvL A+GVD+ F++v hj00278 670 AGILIVLSSVACSLGVFSYIGLPLTLIVIeVIPFLVL-AVGVDNIFILVQ 718 aWqrttkslsetaRkekvnvEvkkRmgetlsEaGpsItITSlTnvlsFgi a qr ++ + + +g++l E++ps + +S+ +F hj00278 719 AYQRDERLQG-ET--------LDQQLGRVLGEVAPSMFLSSFSETVAFFL 759 GiiTptPaIqlFClytavAvfFdFiYQiTFfaAvmaivakrEmkgrhvlf G+++ Pa+ F+l++++Avf dF+ QiT f+ ++ + kr+ k r f hj00278 760 GALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIF 809 vrRtFkaVdiakeespskLWLLGvardiqrissessrpvAPveklkkkkS + +++++s++ hj00278 810 CC-------------------------VRGAEDGTSVQ------------ 822 kfrkDadaesdKktiieEvaekaekssedsdssksheaeqKdltsRGAmG +e+ + + hj00278 823 ------------------------------------ASES--CLF----- 829 rffleiYcpFllnpkvrlcvllvfvvYlaiaiYGcvnikegLdPdkLvve rff ++Y+p+ll + r +v+ +fv+ l+++i +gLd + ++ hj00278 830 RFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPD 879 DSpLveilklrekff<-* DS+ v+++k + +++ hj00278 880 DSYMVDYFKSISQYL 894 PF02460.9.fs: domain 2 of 2, from 1096 to 1264: score 31.0, E = 5.5e-09 *->spflDqlltilpttiqsiiialicMavVcflFIpnpitvfvitlaia ++f q+lti+ +ti +++++l +++V +++ ++vi +a + hj00278 1096 YVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATI 1142 SIdiG.VfGfLSlWGVdLDPIsMitiIMSIGFSVDfsAHIaYhfyrsrgs + +++ fG + lWG+ L ++s ++++MS G SV+f +HI+ +f +s + hj00278 1143 AMVLVnMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKG 1192 esqstpdeRvadALealGWPvfqaalST.iLcvlvLlfVdsYmvvvFfKT + eR+ +AL+ +G vf + + T++ +++vL+f s + ++F hj00278 1193 ----SRVERAEEALAHMGSSVFSGITLTkFGGIVVLAFAKSQIFQIFYFR 1238 vvLVvv.lGllHGLifLPiiLslfvt<-* + L +v lG+ HGLifLP++Ls ++ hj00278 1239 MYLAMVlLGATHGLIFLPVLLSYIGP 1264 //