hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-13263511/chunk_1/iprscan-20080812-13263511.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj00278 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR00917 2A060601: Niemann-Pick C type protein family 3100.9 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR00917 1/1 36 1263 .. 1 1471 [] 3100.9 0 Alignments of top-scoring domains: TIGR00917: domain 1 of 1, from 36 to 1263: score 3100.9, E = 0 *->CvwYgiCgarsddkvlNCpYngpskkppkdgseLiqelCPgFlfpni CvwYg+Cg++++dk++NC+Y+gp+k++pkdg++L+qelCPgF+f+n+ hj00278 36 CVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGNV 82 sekvCCtetQletLksNvqlaiaflaRCPaClrNllnLfCelTCSPkQse s +CC+++Ql+tLk+N+ql+++fl+RCP+C++NllnLfCelTCSP+Qs+ hj00278 83 S--LCCDVRQLQTLKDNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQ 130 FmnVTstekYvdPvtkKtdsqvksvdyyItddyangmYnSCsdVkvpssn F+nVT+te+YvdPvt++t+++vk+++yy+++++an+mYn+C+dV++pssn hj00278 131 FLNVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSN 180 srGtiFHtAlDllcGafaanacnstnWieymagvnnPtaPfaItilfepk ++ Al+llcG ++a+acn+tnWieym++++n++aPf+It++f+++ hj00278 181 DK------ALGLLCG-KDADACNATNWIEYMFNKDNGQAPFTITPVFSDF 223 pdssGmePmNGEiGLFNNSLPqtYLFNHEiPFLSVWmiWtFimFtLVLtY p + GmePmN hj00278 224 P-VRGMEPMN---------------------------------------- 232 GtSmGLVLFGNVKFFDStKVKViASLVstisCddavlevliscscsdcdl ++t++Cd++v+ev+++csc+dc++ hj00278 233 --------------------------NATKGCDESVDEVTAPCSCQDCSI 256 SCkakpPsppkpecslilGSLEvdayevImaIlylVlvlVFlgggllfsv +C++kp++pp+p++++ilG +da++vIm+I+y++++lVF+g ++f+v hj00278 257 VCGPKPQPPPPPAPWTILG---LDAMYVIMWITYMAFLLVFFG--AFFAV 301 rgkkktsfsselsevdaeisssenqsdDTiqSqmLksesqrnekqqaqve ++++k++f+se++++d++i++s+n+sd k+e++++++++a++e hj00278 302 WCYRKRYFVSEYTPIDSNIAFSVNASD--------KGEASCCDPVSAAFE 343 giLerFFtkyGiyvArnPglVlllsvsvvllLgvGlifleveTdPVKLWv g+L+r+Ft++G++++rnPg+V+++s+++++++++Gl+f++v+T+PV+LW+ hj00278 344 GCLRRLFTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWS 393 aPdSrAaLEKeyFDthFgPFYRvEQlIIkavqtsqivynPYtSnadekfp aP+S+A+LEKeyFD+hFgPF+R+EQlII+a++t++++y+PY+S+ad++f+ hj00278 394 APSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFG 443 pvldddlLkkllDlQkkikeleAnYegElvtLddiCfaPlspynsEiDvs p+ld+++L+++lDlQ++i++++A+Y++E+vtL+diC+aPlspyn + hj00278 444 PPLDIQILHQVLDLQIAIENITASYDNETVTLQDICLAPLSPYN-----T 488 nClieStlgyfqnniskLddekeDdgflYvdYveacfecltsPAslnDts nC+i+S+l+yfqn++s+Ld++k+Dd+f+Y+dY++++++c+++PAslnDts hj00278 489 NCTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPASLNDTS 538 LLHesCLsafGGPVdPtvvLGGfePPGDqLtGdnnfseAsAfvvTFlVnN LLH++CL++fGGPV+P++vLGG++ d+n+++A+A+v+TF+VnN hj00278 539 LLHDPCLGTFGGPVFPWLVLGGYD--------DQNYNNATALVITFPVNN 580 fvDNkTdklekAlAWEKkFidfvknyakpnlqakNldIsFsaERSIEDEL ++ N+T+kl++A+AWEK+Fi+fvkny++pnl+ IsF+aERSIEDEL hj00278 581 YY-NDTEKLQRAQAWEKEFINFVKNYKNPNLT-----ISFTAERSIEDEL 624 kRESnaDVlTIlvSCFSFiLYWVSNmSFmSSiSHVSLLqiSYlvMFlYIS +RES++DV+T+++S Y++MFlYIS hj00278 625 NRESDSDVFTVVIS---------------------------YAIMFLYIS 647 LsLGSYYPhvkrfkslfvdSKvaLGisGvlIVlaSVviSVGVFSyiGLka L+LG h k++++l+vdSKv+LGi+G+lIVl+SV++S+GVFSyiGL++ hj00278 648 LALG----HMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPL 693 TLIIvEVIPFLVLAVGVDNSNiACNFNmLADVVATFFIFILVqtyqrler TLI++EVIPFLVLAVGVDN IFILVq+yqr+er hj00278 694 TLIVIEVIPFLVLAVGVDN------------------IFILVQAYQRDER 725 lrrevGVDNmCiLVHAvkRaeillTLEqqlgRvLgkVGPSilLaSLSEsl l++e TL+qqlgRvLg+V+PS++L+S+SE++ hj00278 726 LQGE--------------------TLDQQLGRVLGEVAPSMFLSSFSETV 755 AFfLGaLskMPAVraFSlyAgYSLNAFiiYFLTSiCimLAALAvfiDFLL AFfLGaLs+MPAV++FSl+Ag LAvfiDFLL hj00278 756 AFFLGALSVMPAVHTFSLFAG--------------------LAVFIDFLL 785 QITaFVaLlvLDiKRaEenRvDifpCIkgeksdNSDmEDDDDEENEKLPF QIT+FV+Ll+LDiKR+E+nR+Dif+C++g++++ hj00278 786 QITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDG----------------- 818 ARADiNANFKNSqisaeksSvqkkegLLtrfFKevYaPfLlkkIvkivVI +Svq++e++L+rfFK++Y+P+Llk++++++VI hj00278 819 ------------------TSVQASESCLFRFFKNSYSPLLLKDWMRPIVI 850 afFvGlLlfgIAlatrvdIGLDQelalPqDSYlqdYFkSlaelLevGPPv a+FvG+L+f+IA++++vdIGLDQ+l++P+DSY++dYFkS++++L++GPPv hj00278 851 AIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPV 900 YfVLkgDydYTdsesQNlvCaggGCnkDSivnQIylAarfdNltyIakpa YfVL++++dYT+s++QN+vC+g+GCn+DS+v+QI++Aa++dN+t+I++++ hj00278 901 YFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAP 950 SSWlDDYfdWakaqsSCCkkkktsgtFCn.sgaDpsClRCadLsknaklR SSW+DDYfdW+k+qsSCC++++++++FCn s++Dp+C+RC++L++++k+R hj00278 951 SSWIDDYFDWVKPQSSCCRVDNITDQFCNaSVVDPACVRCRPLTPEGKQR 1000 PdekeFikyLPfFLndnPsakCaKaGHAAYSsAVdlqgshartrIeASyF P++++F+++LP+FL+dnP++kC+K+GHAAYSsAV+++++h+ tr++A+yF hj00278 1001 PQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHG-TRVGATYF 1049 mtYHTvLktqaDyinAlkaAreiaanVtrtlqGRLmsnGvPmisslkleV mtYHTvL+t+aD+i+Alk+Ar+ia+nVt+t++ i++++++V hj00278 1050 MTYHTVLQTSADFIDALKKARLIASNVTETMG----------INGSAYRV 1089 fPYSVFYVFfEQYLTIwsdalinlgisLgaIFiVtlvLlglnvlSavvvv fPYSVFYVF+EQYLTI++d+++nlg+sLgaIF+Vt+vLlg++++Sav+++ hj00278 1090 FPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMC 1139 isvgmivVnllGiMylWnISLNAVSvVNlVmavGIsiEFCsHiaaaFsts ++++m++Vn++G+M+lW+ISLNAVS+VNlVm++GIs+EFCsHi++aF++s hj00278 1140 ATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVS 1189 PkkvSRveRAkeALaeMGSSvFSGITLTKlvGvvVLgFskSeIFqVyYFR +k+SRveRA+eALa+MGSSvFSGITLTK++G+vVL+F+kS+IFq++YFR hj00278 1190 -MKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFR 1238 MYLaiVlLGalHGLvFLPVLLSyiG<-* MYLa+VlLGa+HGL+FLPVLLSyiG hj00278 1239 MYLAMVLLGATHGLIFLPVLLSYIG 1263 //