hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-18074689/chunk_1/iprscan-20090630-18074689.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj00601s2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00169.19.fs PH domain 214.4 8.8e-65 5 PF00169.19.ls PH domain 224.3 2.4e-64 5 PF00620.17.fs RhoGAP domain 185.2 2.3e-54 1 PF00620.17.ls RhoGAP domain 187.2 3.8e-53 1 PF01412.9.fs Putative GTPase activating protein for Arf 123.2 4e-35 1 PF01412.9.ls Putative GTPase activating protein for Arf 122.5 1.1e-33 1 PF00536.20.fs SAM domain (Sterile alpha motif) 42.7 5.9e-12 1 PF07647.7.fs SAM domain (Sterile alpha motif) 39.3 7e-11 1 PF00536.20.ls SAM domain (Sterile alpha motif) 44.7 2.8e-10 1 PF07647.7.ls SAM domain (Sterile alpha motif) 41.3 3.1e-09 1 PF00788.13.fs Ras association (RalGDS/AF-6) domain 27.6 1.3e-06 1 PF00788.13.ls Ras association (RalGDS/AF-6) domain 29.5 1.1e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07647.7.fs 1/1 42 108 .. 1 72 [] 39.3 7e-11 PF07647.7.ls 1/1 42 108 .. 1 72 [] 41.3 3.1e-09 PF00536.20.ls 1/1 43 106 .. 1 65 [] 44.7 2.8e-10 PF00536.20.fs 1/1 43 106 .. 1 65 [] 42.7 5.9e-12 PF00169.19.ls 1/5 521 612 .. 1 92 [] 62.2 1.5e-15 PF00169.19.fs 1/5 521 612 .. 1 92 [] 60.2 7.1e-18 PF00169.19.fs 2/5 626 717 .. 1 92 [] 38.2 3.7e-11 PF00169.19.ls 2/5 626 717 .. 1 92 [] 40.1 6.8e-09 PF01412.9.ls 1/1 723 845 .. 1 137 [] 122.5 1.1e-33 PF01412.9.fs 1/1 733 837 .. 12 129 .. 123.2 4e-35 PF00169.19.fs 3/5 931 1041 .. 1 92 [] 36.3 1.3e-10 PF00169.19.ls 3/5 931 1041 .. 1 92 [] 38.3 2.4e-08 PF00620.17.fs 1/1 1167 1320 .. 1 155 [] 185.2 2.3e-54 PF00620.17.ls 1/1 1167 1320 .. 1 155 [] 187.2 3.8e-53 PF00788.13.fs 1/1 1364 1458 .. 1 97 [] 27.6 1.3e-06 PF00788.13.ls 1/1 1364 1458 .. 1 97 [] 29.5 1.1e-05 PF00169.19.fs 5/5 1473 1575 .. 1 92 [] 64.0 5.1e-19 PF00169.19.ls 5/5 1473 1575 .. 1 92 [] 66.0 1.1e-16 Alignments of top-scoring domains: PF07647.7.fs: domain 1 of 1, from 42 to 108: score 39.3, E = 7e-11 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v+ ++ ++ ++L si+l +qY F + g+t+ ++ + ++ + L hj00601s2 42 VSEVNV-DIKDFLMSINL-EQYLLHFHESGFTTVKDC-AAINDSLL- 84 klalGitsvghRkkilkkiqelkqq<-* + ++Gi+ +ghR++ilk++q ++ hj00601s2 85 Q-KIGISPTGHRRRILKQLQIILSK 108 PF07647.7.ls: domain 1 of 1, from 42 to 108: score 41.3, E = 3.1e-09 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v+ ++ ++ ++L si+l +qY F + g+t+ ++ + ++ + L hj00601s2 42 VSEVNV-DIKDFLMSINL-EQYLLHFHESGFTTVKDC-AAINDSLL- 84 klalGitsvghRkkilkkiqelkqq<-* + ++Gi+ +ghR++ilk++q ++ hj00601s2 85 Q-KIGISPTGHRRRILKQLQIILSK 108 PF00536.20.ls: domain 1 of 1, from 43 to 106: score 44.7, E = 2.8e-10 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG ++ +++ + ++L si l+qY +F+++g++++++ + + + L+++G hj00601s2 43 SEVNVD-IKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIG 88 vtllGHrkKIlssIqgLk<-* + GHr +Il+ +q hj00601s2 89 ISPTGHRRRILKQLQIIL 106 PF00536.20.fs: domain 1 of 1, from 43 to 106: score 42.7, E = 5.9e-12 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG ++ +++ + ++L si l+qY +F+++g++++++ + + + L+++G hj00601s2 43 SEVNVD-IKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIG 88 vtllGHrkKIlssIqgLk<-* + GHr +Il+ +q hj00601s2 89 ISPTGHRRRILKQLQIIL 106 PF00169.19.ls: domain 1 of 5, from 521 to 612: score 62.2, E = 1.5e-15 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL +k+GwL k +++gk+ ++kR++ + + +++yy ++k+ kg+ipL hj00601s2 521 KVKSGWLDKLSpqGKRMFQKRWVKFDGLSISYYNNEKeMYSKGIIPL 567 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< s i+ ++v +n Fe++t++r t++++ e eeer++W++ + +a++ hj00601s2 568 SAISTVRVQG---DNKFEVVTtQR-TFVFRVEKEEERNDWISILLNALK 612 -* hj00601s2 - - PF00169.19.fs: domain 1 of 5, from 521 to 612: score 60.2, E = 7.1e-18 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL +k+GwL k +++gk+ ++kR++ + + +++yy ++k+ kg+ipL hj00601s2 521 KVKSGWLDKLSpqGKRMFQKRWVKFDGLSISYYNNEKeMYSKGIIPL 567 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< s i+ ++v +n Fe++t++r t++++ e eeer++W++ + +a++ hj00601s2 568 SAISTVRVQG---DNKFEVVTtQR-TFVFRVEKEEERNDWISILLNALK 612 -* hj00601s2 - - PF00169.19.fs: domain 2 of 5, from 626 to 717: score 38.2, E = 3.7e-11 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk....kkpkgsip ++k+G+L ++g k + vL++++ +++k++++ ++ +ip hj00601s2 626 PEKCGYLELRG---YKAKIFTVLSGNSVWLCKNEQdfksGLGITIIP 669 LsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair ++ ++v+ v++ k +Fei+t+ r ++ + ae+e+e+++W++a q++i+ hj00601s2 670 MNVANVKQVDRT-VKQSFEIITpYR-SFSFTAETEKEKQDWIEAVQQSIA 717 <-* hj00601s2 - - PF00169.19.ls: domain 2 of 5, from 626 to 717: score 40.1, E = 6.8e-09 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk....kkpkgsip ++k+G+L ++g k + vL++++ +++k++++ ++ +ip hj00601s2 626 PEKCGYLELRG---YKAKIFTVLSGNSVWLCKNEQdfksGLGITIIP 669 LsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair ++ ++v+ v++ k +Fei+t+ r ++ + ae+e+e+++W++a q++i+ hj00601s2 670 MNVANVKQVDRT-VKQSFEIITpYR-SFSFTAETEKEKQDWIEAVQQSIA 717 <-* hj00601s2 - - PF01412.9.ls: domain 1 of 1, from 723 to 845: score 122.5, E = 1.1e-33 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn +v +++ ++ +N+ C+DC+a p+P+WaS+nl v++C +C+G HR+ hj00601s2 723 YEVAEKIWFNE-SNRSCADCKA-PDPDWASINLCVVICKKCAGQHRS 767 LfGvHiSkVnvRSltLD..sWtpeelrklesckgGNenansfwEsnlddf L G+ +SkV RSl++D + W e ++++ ++GN++an fw +nl + hj00601s2 768 L-GPKDSKV--RSLKMDasIWSNELIELFI--VIGNKRANDFWAGNLQKD 812 slkpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* + ds + +k+++fi +KY+e +f + + + hj00601s2 813 EELHMDS---------PVEKRKNFITQKYKEGKFRKTLLASL 845 PF01412.9.fs: domain 1 of 1, from 733 to 837: score 123.2, E = 4e-35 *->pgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRnLfGvHiSkVnv ++N+ C+DC+a p+P+WaS+nl v++C +C+G HR+L G+ +SkV hj00601s2 733 ESNRSCADCKA-PDPDWASINLCVVICKKCAGQHRSL-GPKDSKV-- 775 RSltLD..sWtpeelrklesckgGNenansfwEsnlddfslkpkdsdaaa RSl++D + W e ++++ ++GN++an fw +nl + + ds hj00601s2 776 RSLKMDasIWSNELIELFI--VIGNKRANDFWAGNLQKDEELHMDS---- 819 vKCqddrqkyesfiaaKYeeklf<-* + +k+++fi +KY+e +f hj00601s2 820 -----PVEKRKNFITQKYKEGKF 837 PF00169.19.fs: domain 3 of 5, from 931 to 1041: score 36.3, E = 1.3e-10 *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk. + + +L++ + ++ +++++ +++ k ++vL ++ L+yy+++k+ hj00601s2 931 TFLCDFLYQAPsaasklssekkLLEETNKKWCVLEGGFLSYYENDKs 977 kkpkgsipLsgiqvtkvpdn......krkncFeirt.dretlllqaesee +p g+i+++++ + + + + +++ ++Fei ++++++l+ ae+++ hj00601s2 978 TTPNGTININEVICLAIHKEdfylntGPIFIFEIYLpSERVFLFGAETSQ 1027 erkeWvkaiqsair<-* ++W +ai ++ hj00601s2 1028 AQRKWTEAIAKHFV 1041 PF00169.19.ls: domain 3 of 5, from 931 to 1041: score 38.3, E = 2.4e-08 *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk. + + +L++ + ++ +++++ +++ k ++vL ++ L+yy+++k+ hj00601s2 931 TFLCDFLYQAPsaasklssekkLLEETNKKWCVLEGGFLSYYENDKs 977 kkpkgsipLsgiqvtkvpdn......krkncFeirt.dretlllqaesee +p g+i+++++ + + + + +++ ++Fei ++++++l+ ae+++ hj00601s2 978 TTPNGTININEVICLAIHKEdfylntGPIFIFEIYLpSERVFLFGAETSQ 1027 erkeWvkaiqsair<-* ++W +ai ++ hj00601s2 1028 AQRKWTEAIAKHFV 1041 PF00620.17.fs: domain 1 of 1, from 1167 to 1320: score 185.2, E = 2.3e-54 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P+iv +Ci+f+ ++GL ++ Iy+++G+ +i eL e f ++++ ++ hj00601s2 1167 PIIVNSCIAFVTQYGLGCKYIYQKNGDPLHISELLESFKKDARSFKL 1213 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea + + +v+ +LK FL ++ + Llt+ely+ +i a++++d+ er+++ hj00601s2 1214 RAGKHQLEDVTAVLKSFLSDIDDALLTKELYPYWIS-ALDTQDDKERIKK 1262 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr + + +r+LP +Nr+tL+++++hL+rV+++se+N+M+ahNLA+vF+ +L++ hj00601s2 1263 YGAFIRSLPGVNRATLAAIIEHLYRVQKCSEINHMNAHNLALVFSSCLFQ 1312 ppdgdsad<-* ++ +s + hj00601s2 1313 TKGQTSEE 1320 PF00620.17.ls: domain 1 of 1, from 1167 to 1320: score 187.2, E = 3.8e-53 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P+iv +Ci+f+ ++GL ++ Iy+++G+ +i eL e f ++++ ++ hj00601s2 1167 PIIVNSCIAFVTQYGLGCKYIYQKNGDPLHISELLESFKKDARSFKL 1213 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea + + +v+ +LK FL ++ + Llt+ely+ +i a++++d+ er+++ hj00601s2 1214 RAGKHQLEDVTAVLKSFLSDIDDALLTKELYPYWIS-ALDTQDDKERIKK 1262 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr + + +r+LP +Nr+tL+++++hL+rV+++se+N+M+ahNLA+vF+ +L++ hj00601s2 1263 YGAFIRSLPGVNRATLAAIIEHLYRVQKCSEINHMNAHNLALVFSSCLFQ 1312 ppdgdsad<-* ++ +s + hj00601s2 1313 TKGQTSEE 1320 PF00788.13.fs: domain 1 of 1, from 1364 to 1458: score 27.6, E = 1.3e-06 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe ++ + Vy e p+++ i++s+ + aee+ + +L ++ ++ + hj00601s2 1364 GDLLIEVYVERKEPDCSIIIRISPVMEAEELTNDILAIKNIIPTKGD 1410 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq..rsrFlLrrr ++ +E v+e ++ er +L+ E++l+ +l++++ a++++ ++++r hj00601s2 1411 IWATFE---VIENEELER-PLHYKENVLEQVLRWSSLAEpgSAYLVVKRF 1456 ed<-* hj00601s2 1457 LT 1458 PF00788.13.ls: domain 1 of 1, from 1364 to 1458: score 29.5, E = 1.1e-05 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe ++ + Vy e p+++ i++s+ + aee+ + +L ++ ++ + hj00601s2 1364 GDLLIEVYVERKEPDCSIIIRISPVMEAEELTNDILAIKNIIPTKGD 1410 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq..rsrFlLrrr ++ +E v+e ++ er +L+ E++l+ +l++++ a++++ ++++r hj00601s2 1411 IWATFE---VIENEELER-PLHYKENVLEQVLRWSSLAEpgSAYLVVKRF 1456 ed<-* hj00601s2 1457 LT 1458 PF00169.19.fs: domain 5 of 5, from 1473 to 1575: score 64.0, E = 5.1e-19 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkk.kkpkg ikeG L+ k+++++ ++ ++++RyfvL+d+ L++ykd k++k+ + hj00601s2 1473 SIKEGILKIKEepskilSGNKFQDRYFVLRDGFLFLYKDVKsSKHDK 1519 sipLsgiqvtkvpdn..krkncFeirt.dr.etlllqaeseeerkeWvka +++Ls++++++ ++ + k + ++ ++ +++ +++l+++s++ +eW+++ hj00601s2 1520 MFSLSSMKFYRGVKKkmKPPTSWGLTAySEkHHWHLCCDSSQTQTEWMTS 1569 iqsair<-* i a++ hj00601s2 1570 IFIAQH 1575 PF00169.19.ls: domain 5 of 5, from 1473 to 1575: score 66.0, E = 1.1e-16 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkk.kkpkg ikeG L+ k+++++ ++ ++++RyfvL+d+ L++ykd k++k+ + hj00601s2 1473 SIKEGILKIKEepskilSGNKFQDRYFVLRDGFLFLYKDVKsSKHDK 1519 sipLsgiqvtkvpdn..krkncFeirt.dr.etlllqaeseeerkeWvka +++Ls++++++ ++ + k + ++ ++ +++ +++l+++s++ +eW+++ hj00601s2 1520 MFSLSSMKFYRGVKKkmKPPTSWGLTAySEkHHWHLCCDSSQTQTEWMTS 1569 iqsair<-* i a++ hj00601s2 1570 IFIAQH 1575 //