hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-18074689/chunk_1/iprscan-20090630-18074689.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj00601s2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00233 275.1 5.4e-78 5 SM00324 183.6 1.8e-50 1 SM00105 124.5 1.2e-32 1 SM00454 43.3 3.1e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00454 1/1 42 108 .. 1 67 [] 43.3 3.1e-08 SM00233 1/5 521 614 .. 1 82 [] 73.0 3.7e-17 SM00233 2/5 626 719 .. 1 82 [] 53.9 2.1e-11 SM00105 1/1 724 845 .. 1 139 [] 124.5 1.2e-32 SM00233 3/5 931 1043 .. 1 82 [] 51.7 9.3e-11 SM00233 4/5 1053 1152 .. 1 82 [] 28.5 0.00095 SM00324 1/1 1164 1340 .. 1 193 [] 183.6 1.8e-50 SM00233 5/5 1473 1577 .. 1 82 [] 68.0 1.2e-15 Alignments of top-scoring domains: SM00454: domain 1 of 1, from 42 to 108: score 43.3, E = 3.1e-08 *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel vs+ ++ + ++L+si+leqY +F + g+++ + +++++L+++ hj00601s2 42 VSeVNVD-IKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKI 87 GitllGhRkkIlsaiqklkeq<-* Gi+++GhR++Il+ +q +++ hj00601s2 88 GISPTGHRRRILKQLQIILSK 108 SM00233: domain 1 of 5, from 521 to 614: score 73.0, E = 3.7e-17 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL +k+GwL k+s+++k+ ++kr++ +++ +++yy ++++ kg+ipL hj00601s2 521 KVKSGWLDKLSpqgKrMFQKRWVKFDGLSISYYNNEkemYSKGIIPL 567 sgc.svre.p..cFeivt.drtlllqAeseeereeWvealqsaiaka<-* s +++vr++ ++ Fe+vt++rt++++ e eeer++W++ l +a++++ hj00601s2 568 SAIsTVRVqGdnKFEVVTtQRTFVFRVEKEEERNDWISILLNALKSQ 614 SM00233: domain 2 of 5, from 626 to 719: score 53.9, E = 2.1e-11 *->vikeGwLlkkskswkkryfvLfngvLlyyksk......kpkgsipLs ++k+G+L ++ k + vL ++++ ++k++++ +++ + +ip++ hj00601s2 626 PEKCGYLELRG-YKAKIFTVLSGNSVWLCKNEqdfksgLGITIIPMN 671 gcsvre.p.....cFeivt.drtlllqAeseeereeWvealqsaiaka<- + v+ ++ + +Fei+t+ r++ + Ae+e+e+++W+ea q+ ia+ hj00601s2 672 VANVKQvDrtvkqSFEIITpYRSFSFTAETEKEKQDWIEAVQQSIAET 719 * hj00601s2 - - SM00105: domain 1 of 1, from 724 to 845: score 124.5, E = 1.2e-32 *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs e a + + ++N+ C+DC+a p+P+WaS+nl v++C +C+G HRs hj00601s2 724 EVAEKIWFN--ESNRSCADCKA-PDPDWASINLCVVICKKCAGQHRS 767 LfGvHiSkVnvRSltLD..tWteeeLrllesckgGNenansfwesnlddf L G+ +SkV RSl++D + W e ++l+ +GN++an+fw +nl ++ hj00601s2 768 L-GPKDSKV--RSLKMDasIWSNELIELFI--VIGNKRANDFWAGNLQKD 812 slkpkdsdaaasvKCeddrqkyesfiaaKYeeklfrvdkesaee<-* + ds + +k+++fi +KY+e +f + + a+ hj00601s2 813 EELHMDS----------PVEKRKNFITQKYKEGKF-RKTLLASL 845 SM00233: domain 3 of 5, from 931 to 1043: score 51.7, E = 9.3e-11 *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk.. + ++ +L++ + ++ ++ ++ ++ k+++vL +g+L+yy+++++ hj00601s2 931 TFLCDFLYQAPsaasklssekklLeETNKKWCVLEGGFLSYYENDks 977 .kpkgsipLsgcsvre.p............cFeivt.dr.tlllqAesee ++p g+i+++++++ ++++ + ++ Fei+ ++++++l+ Ae+++ hj00601s2 978 tTPNGTININEVICLAiHkedfylntgpifIFEIYLpSErVFLFGAETSQ 1027 ereeWvealqsaiaka<-* +++W ea+ ++ ++ hj00601s2 1028 AQRKWTEAIAKHFVPL 1043 SM00233: domain 4 of 5, from 1053 to 1152: score 28.5, E = 0.00095 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk.....kpkgsi + G+L k + +++w+k +f ++ ++L+++ + ++ +++ + hj00601s2 1053 YDLIGQLFYKDchaLdQWRKGWFAMDKSSLHFCLQMqevqgDRMHLR 1099 pLsgcsvre.p.......cFeivt.drtlllqAeseeereeWvealqsai L++++++ + ++++ +++ +v ++rtl+++ ++ +++ W +a+++a+ hj00601s2 1100 RLQELTISTmVqngekldVLLLVEkGRTLYIHGHTKLDFTVWHTAIEKAA 1149 aka<-* hj00601s2 1150 GTD 1152 SM00324: domain 1 of 1, from 1164 to 1340: score 183.6, E = 1.8e-50 *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged. ++Piiv +Ci+++ ++Gl ++ IY+++G ++ eL+e+f ++ + hj00601s2 1164 NDVPIIVNSCIAFVTQYGLGCKYIYQKNGDPLHISELLESFKKDARs 1210 dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie ++ +++ dv+ +LK++L + + Llt+ely+ +i+ hj00601s2 1211 F-----------KLRAGKHQLEDVTAVLKSFLSDIDDALLTKELYPYWIS 1249 aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL a +d+ er++++ ++++LP +nratL ++++HL hj00601s2 1250 ALDT--------------QDDKERIKKYGAFIRSLPGVNRATLAAIIeHL 1285 nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl +rV+++se N+M+a+NLA+vF+ +L++ +++++++ + +++n++ve++ hj00601s2 1286 YRVQKCSEINHMNAHNLALVFSSCLFQTKgqtseevNVIEDLINNYVEIF 1335 ienad<-* +++d hj00601s2 1336 EVKED 1340 SM00233: domain 5 of 5, from 1473 to 1577: score 68.0, E = 1.2e-15 *->vikeGwLlkks.......k.swkkryfvLfngvLlyyksk...kpkg ikeG L++k+ +++ +++++++ryfvL++g+L++yk+ +++k+ + hj00601s2 1473 SIKEGILKIKEepskilsGnKFQDRYFVLRDGFLFLYKDVkssKHDK 1519 sipLsgcsvre.p........cFeivt.dr..tlllqAeseeereeWvea +++Ls+++++++++++ +++ ++ ++ ++++ ++l+++s+++++eW+++ hj00601s2 1520 MFSLSSMKFYRgVkkkmkpptSWGLTAySEkhHWHLCCDSSQTQTEWMTS 1569 lqsaiaka<-* + a++++ hj00601s2 1570 IFIAQHEY 1577 //