hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-13400011/chunk_1/iprscan-20080812-13400011.nocrc
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Query sequence: hj00856
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00562                                                 233.3    2.1e-65   1
SM00676                                                 143.7    1.9e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00676    1/1       7    95 ..     1   126 []   143.7  1.9e-38
SM00562    1/1      95   233 ..     1   142 []   233.3  2.1e-65

Alignments of top-scoring domains:
SM00676: domain 1 of 1, from 7 to 95: score 143.7, E = 1.9e-38
                   *->dkkvLrFdAyweddvamsyeepgliRkfkIsYYLeDDTievfEpdvr
                      +++++ F+A+w+d++a      +l+R++++++Y++D+++e++  dv+
     hj00856     7    HSERFVFIAEWYDPNA------SLLRRYELLFYPGDGSVEMH--DVK 45   

                   NsGilglgtfLkRqRvpkpgeenkknfyqvdqevsppddpeyytakDLnv
                   N+     +tfLkR+++ +                        ++ +DL++
     hj00856    46 NH-----RTFLKRTKYDN------------------------LHLEDLFI 66   

                   GttinvfGRqfrIvDcgDeFTrnyleskg<-*
                   G+++nvf+Rq++++D+gD++T+++l s++   
     hj00856    67 GNKVNVFSRQLVLIDYGDQYTARQLGSRK    95   

SM00562: domain 1 of 1, from 95 to 233: score 233.3, E = 2.1e-65
                   *->mErTlaiIKPDaVqrgLiGeIisRfErkGFkivalKmlqlteelAee
                      +E+Tla+IKPDa+   + GeIi+++ ++GF+i++lKm+ l++++A  
     hj00856    95    KEKTLALIKPDAI--SKAGEIIEIINKAGFTITKLKMMMLSRKEALD 139  

                   fYaVeHkgKPFFndLVeFMtSGPVvAMVLEGedAvktwRtLmGaTdpevp
                   f++ +H+++PFFn+L++F+t GP++AM++ ++dA+++w++L+G+ +++v+
     hj00856   140 FHV-DHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPANSGVA 188  

                   aeaaPGTIRgDFglsvgrNavHGSDSpEsAeREIalfFpesEive<-*
                   +  a ++IR+ Fg++  rNa HG DS++sA+RE++lfFp+s  ++   
     hj00856   189 RTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCG    233  

//