hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-13453137/chunk_1/iprscan-20080812-13453137.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: hj01066
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00403.16.ls Heavy-metal-associated domain 299.9 4.4e-87 6
PF00403.16.fs Heavy-metal-associated domain 290.7 2.5e-84 7
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00403.16.fs 1/7 21 85 .. 1 64 [] 48.3 5.9e-13
PF00403.16.ls 1/6 21 85 .. 1 64 [] 50.3 5.9e-12
PF00403.16.ls 2/6 184 248 .. 1 64 [] 49.9 7.7e-12
PF00403.16.fs 3/7 184 248 .. 1 64 [] 48.0 7.6e-13
PF00403.16.ls 3/6 290 354 .. 1 64 [] 50.2 6.6e-12
PF00403.16.fs 4/7 290 354 .. 1 64 [] 48.2 6.5e-13
PF00403.16.ls 4/6 390 454 .. 1 64 [] 62.4 1.3e-15
PF00403.16.fs 5/7 390 454 .. 1 64 [] 60.5 2.2e-16
PF00403.16.fs 6/7 501 565 .. 1 64 [] 48.2 6.5e-13
PF00403.16.ls 5/6 501 565 .. 1 64 [] 50.2 6.6e-12
PF00403.16.ls 6/6 577 641 .. 1 64 [] 36.9 6.5e-08
PF00403.16.fs 7/7 577 633 .. 1 56 [. 36.5 1.3e-09
Alignments of top-scoring domains:
PF00403.16.fs: domain 1 of 7, from 21 to 85: score 48.3, E = 5.9e-13
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
++v+gmtC +Cv +e + k+ GV ++V+le++ +t+++d+ l+
hj01066 21 TISVeGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQ 67
klkklveaveitgydadl<-*
+k l+ea++++g+da+
hj01066 68 TPKTLQEAIDDMGFDAVI 85
PF00403.16.ls: domain 1 of 6, from 21 to 85: score 50.3, E = 5.9e-12
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
++v+gmtC +Cv +e + k+ GV ++V+le++ +t+++d+ l+
hj01066 21 TISVeGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQ 67
klkklveaveitgydadl<-*
+k l+ea++++g+da+
hj01066 68 TPKTLQEAIDDMGFDAVI 85
PF00403.16.ls: domain 2 of 6, from 184 to 248: score 49.9, E = 7.7e-12
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
+ +v+gmtC +C s +e ++ kl GV+ ++V+l+++++t++++++l
hj01066 184 KMKVeGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLI 230
klkklveaveitgydadl<-*
++++ ++ +e++g+ a +
hj01066 231 SVEEMKKQIEAMGFPAFV 248
PF00403.16.fs: domain 3 of 7, from 184 to 248: score 48.0, E = 7.6e-13
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
+ +v+gmtC +C s +e ++ kl GV+ ++V+l+++++t++++++l
hj01066 184 KMKVeGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLI 230
klkklveaveitgydadl<-*
++++ ++ +e++g+ a +
hj01066 231 SVEEMKKQIEAMGFPAFV 248
PF00403.16.ls: domain 3 of 6, from 290 to 354: score 50.2, E = 6.6e-12
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
+ ++gm+C +Cvs++e +ls+l V s+ V+le++ ++V+++ ++
hj01066 290 TFIIdGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVKYNASSV 336
klkklveaveitgydadl<-*
+++l +a+e+ ++
hj01066 337 TPESLRKAIEAVSPGLYR 354
PF00403.16.fs: domain 4 of 7, from 290 to 354: score 48.2, E = 6.5e-13
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
+ ++gm+C +Cvs++e +ls+l V s+ V+le++ ++V+++ ++
hj01066 290 TFIIdGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVKYNASSV 336
klkklveaveitgydadl<-*
+++l +a+e+ ++
hj01066 337 TPESLRKAIEAVSPGLYR 354
PF00403.16.ls: domain 4 of 6, from 390 to 454: score 62.4, E = 1.3e-15
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
++n++gmtC +Cv+++e ++sk+pGV+s+ V+l+++ tV++d+ l+
hj01066 390 VINIdGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLT 436
klkklveaveitgydadl<-*
+++ l a+e++g+da+l
hj01066 437 SPETLRGAIEDMGFDATL 454
PF00403.16.fs: domain 5 of 7, from 390 to 454: score 60.5, E = 2.2e-16
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
++n++gmtC +Cv+++e ++sk+pGV+s+ V+l+++ tV++d+ l+
hj01066 390 VINIdGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLT 436
klkklveaveitgydadl<-*
+++ l a+e++g+da+l
hj01066 437 SPETLRGAIEDMGFDATL 454
PF00403.16.fs: domain 6 of 7, from 501 to 565: score 48.2, E = 6.5e-13
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
+ v+gmtC++Cv+++e++l++ +G++s+ V l gk++V +++ +
hj01066 501 YIQVtGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVI 547
klkklveaveitgydadl<-*
++ + e++ g++a++
hj01066 548 QPPMIAEFIRELGFGATV 565
PF00403.16.ls: domain 5 of 6, from 501 to 565: score 50.2, E = 6.6e-12
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
+ v+gmtC++Cv+++e++l++ +G++s+ V l gk++V +++ +
hj01066 501 YIQVtGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVI 547
klkklveaveitgydadl<-*
++ + e++ g++a++
hj01066 548 QPPMIAEFIRELGFGATV 565
PF00403.16.ls: domain 6 of 6, from 577 to 641: score 36.9, E = 6.5e-08
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
+l+v+gmtC++Cv k+e l+k G+ ++V l+t+k+ +++d+++
hj01066 577 ELVVrGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEII 623
klkklveaveitgydadl<-*
++++++++e + +
hj01066 624 GPRDIIHTIEVSAKNLCF 641
PF00403.16.fs: domain 7 of 7, from 577 to 633: score 36.5, E = 1.3e-09
*->ilnv.gmtCegCvskvekalsklpGVtsveVdletgkltVtgdedlp
+l+v+gmtC++Cv k+e l+k G+ ++V l+t+k+ +++d+++
hj01066 577 ELVVrGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEII 623
klkklveave<-*
++++++++e
hj01066 624 GPRDIIHTIE 633
//