hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-13453137/chunk_1/iprscan-20080812-13453137.nocrc
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Query sequence: hj01066
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TIGR00003 TIGR00003: copper ion binding protein 166.0 3.1e-47 6
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TIGR00003 1/6 19 84 .. 1 66 [] 59.2 4.5e-15
TIGR00003 5/6 499 564 .. 1 66 [] 32.9 3.3e-07
Alignments of top-scoring domains:
TIGR00003: domain 1 of 6, from 19 to 84: score 59.2, E = 4.5e-15
*->KktfqVkGMsCnHCVdkIEkfVGEleGVSavkVqLeKekVvVeFDap
+t++V+GM+Cn CV IE +G GV +kV+Le + + + D
hj01066 19 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPK 65
kvsakeIkeAIlDaGYeve<-*
+ k +eAI D G++++
hj01066 66 LQTPKTLQEAIDDMGFDAV 84
TIGR00003: domain 5 of 6, from 499 to 564: score 32.9, E = 3.3e-07
*->KktfqVkGMsCnHCVdkIEkfVGEleGVSavkVqLeKekVvVeFDap
K +qV GM+C CV+ IE + eG+ + V L ++k+ V +
hj01066 499 KCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPA 545
kvsakeIkeAIlDaGYeve<-*
+ I+e I ++G+ +
hj01066 546 VIQPPMIAEFIRELGFGAT 564
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