hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-13572517/chunk_1/iprscan-20080812-13572517.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj01412 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00179 733.8 4.6e-216 16 SM00181 456.5 1.3e-132 17 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00181 1/17 82 111 .. 1 32 [] 26.8 0.003 SM00179 1/16 306 346 .. 1 34 [] 49.2 5.4e-10 SM00181 2/17 309 346 .. 1 32 [] 28.9 0.00068 SM00179 2/16 500 541 .. 1 34 [] 38.7 7.7e-07 SM00181 3/17 503 541 .. 1 32 [] 25.0 0.01 SM00179 3/16 542 583 .. 1 34 [] 57.7 1.5e-12 SM00181 4/17 545 583 .. 1 32 [] 30.1 0.00031 SM00179 4/16 584 624 .. 1 34 [] 48.8 7e-10 SM00181 5/17 587 624 .. 1 32 [] 25.5 0.0074 SM00179 5/16 625 664 .. 1 34 [] 44.6 1.3e-08 SM00181 6/17 628 664 .. 1 32 [] 22.7 0.05 SM00179 6/16 665 705 .. 1 34 [] 51.7 9.4e-11 SM00181 7/17 668 705 .. 1 32 [] 27.9 0.0014 SM00179 7/16 706 746 .. 1 34 [] 55.4 7.2e-12 SM00181 8/17 709 746 .. 1 32 [] 34.0 2.1e-05 SM00179 8/16 747 787 .. 1 34 [] 58.0 1.3e-12 SM00181 9/17 750 787 .. 1 32 [] 31.8 9.1e-05 SM00179 9/16 788 828 .. 1 34 [] 53.7 2.4e-11 SM00181 10/17 791 828 .. 1 32 [] 37.5 1.8e-06 SM00179 10/16 829 870 .. 1 34 [] 54.9 1e-11 SM00181 11/17 832 870 .. 1 32 [] 26.6 0.0034 SM00179 11/16 871 912 .. 1 34 [] 46.2 4.3e-09 SM00181 12/17 874 912 .. 1 32 [] 20.9 0.18 SM00179 12/16 913 955 .. 1 34 [] 29.5 0.00037 SM00181 13/17 916 955 .. 1 32 [] 10.7 29 SM00179 13/16 1051 1093 .. 1 34 [] 32.4 6.3e-05 SM00181 14/17 1054 1093 .. 1 32 [] 19.4 0.49 SM00179 14/16 1094 1134 .. 1 34 [] 37.1 2.4e-06 SM00181 15/17 1097 1134 .. 1 32 [] 20.1 0.31 SM00179 15/16 1248 1288 .. 1 34 [] 21.8 0.0033 SM00181 16/17 1251 1288 .. 1 32 [] 34.5 1.5e-05 SM00179 16/16 1289 1333 .. 1 34 [] 53.9 2.1e-11 SM00181 17/17 1292 1333 .. 1 32 [] 34.0 2e-05 Alignments of top-scoring domains: SM00181: domain 1 of 17, from 82 to 111: score 26.8, E = 0.003 *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-* C+ pC nG G+C + +C+Cp p +tg+ C+ hj01412 82 ICHlPCMNG-----GQCSsRDKCqCP-PNFTGkLCQ 111 SM00179: domain 1 of 16, from 306 to 346: score 49.2, E = 5.4e-10 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- Di+EC+ +++C+nG C N+ GSYrC+C+ G+ ++++ +C+ hj01412 306 DINECqlqgVCPNG----ECLNtMGSYRCtCKIGFGpdptfSSCV 346 * hj01412 - - SM00181: domain 2 of 17, from 309 to 346: score 28.9, E = 0.00068 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC+ ++ C nG +C+++ +sy+C+C+ G+ +++ ++C+ hj01412 309 ECQlqgVCPNG------ECLntmgSYRCtCK-IGFGPdptfsSCV 346 * hj01412 - - SM00179: domain 2 of 16, from 500 to 541: score 38.7, E = 7.7e-07 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< i+EC+ ++++C+ G +CiN + Y+C C +Gy+ + ++r C+ hj01412 500 EINECtvnpdICGAG----HCINlPVRYTCiCYEGYRfseqqRKCV 541 -* hj01412 - - SM00181: domain 3 of 17, from 503 to 541: score 25.0, E = 0.01 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC +++ C+ G +Ci+ + ytC C +Gy+ +++++ C+ hj01412 503 ECTvnpdICGAG------HCInlpvRYTCiCY-EGYRFseqqrKCV 541 -* hj01412 - - SM00179: domain 3 of 16, from 542 to 583: score 57.7, E = 1.5e-12 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< DiDEC++ +++C++G +C+N++GS+ C Cp+G++ + ++nC+ hj01412 542 DIDECtqvqhLCSQG----RCENtEGSFLCiCPAGFMaseegTNCI 583 -* hj01412 - - SM00181: domain 4 of 17, from 545 to 583: score 30.1, E = 0.00031 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC + ++ Cs+G +C ++++s+ C Cp +G++ ++++++C+ hj01412 545 ECTqvqhLCSQG------RCEntegSFLCiCP-AGFMAseegtNCI 583 -* hj01412 - - SM00179: domain 4 of 16, from 584 to 624: score 48.8, E = 7e-10 *->DiDEC....pCqnGGptgtCiN.vGSYrC..CppGyt....rnCe<- D+DEC ++++C+ G +C+N+vG +rC+ C+ Gy+ +++++Ce hj01412 584 DVDEClrpdVCGEG----HCVNtVGAFRCeyCDSGYRmtqrGRCE 624 * hj01412 - - SM00181: domain 5 of 17, from 587 to 624: score 25.5, E = 0.0074 *->eCa...pCsnGgtEqnGtCi....sytC..CpgpGytg....rCe<- eC++++ C++G +C+++ + ++C+ C Gy+ ++++rCe hj01412 587 ECLrpdVCGEG------HCVntvgAFRCeyCD-SGYRMtqrgRCE 624 * hj01412 - - SM00179: domain 5 of 16, from 625 to 664: score 44.6, E = 1.3e-08 *->DiDEC....pCqnGGptgtCiN.vGSYrC..CppGyt...rnCe<-* DiDEC +++ C+ +C+N++GSY+C +C +G+++ +++C hj01412 625 DIDEClnpsTCPDE----QCVNsPGSYQCvpCTEGFRgwnGQCL 664 SM00181: domain 6 of 17, from 628 to 664: score 22.7, E = 0.05 *->eCa...pCsnGgtEqnGtCi....sytC..CpgpGytg...rCe<-* eC++++ C +C+++++sy+C +C +G++g +++C hj01412 628 ECLnpsTCPDE------QCVnspgSYQCvpCT-EGFRGwngQCL 664 SM00179: domain 6 of 16, from 665 to 705: score 51.7, E = 9.4e-11 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- D+DEC ++++C nG C N +GSY C+C+ Gyt+++++++C hj01412 665 DVDEClepnVCANG----DCSNlEGSYMCsCHKGYTrtpdhKHCR 705 * hj01412 - - SM00181: domain 7 of 17, from 668 to 705: score 27.9, E = 0.0014 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC++++ C nG C + ++sy C+C+ Gyt ++++++C hj01412 668 ECLepnVCANG------DCSnlegSYMCsCH-KGYTRtpdhkHCR 705 * hj01412 - - SM00179: domain 7 of 16, from 706 to 746: score 55.4, E = 7.2e-12 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- DiDEC+++++C nG +C N++GS+rC+C +Gy+ + + +Ce hj01412 706 DIDECqqgnLCVNG----QCKNtEGSFRCtCGQGYQlsaakDQCE 746 * hj01412 - - SM00181: domain 8 of 17, from 709 to 746: score 34.0, E = 2.1e-05 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC++++ C nG +C ++++s++C+C +Gy+++ +++Ce hj01412 709 ECQqgnLCVNG------QCKntegSFRCtCG-QGYQLsaakdQCE 746 * hj01412 - - SM00179: domain 8 of 16, from 747 to 787: score 58.0, E = 1.3e-12 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- DiDEC+++++C +G +C+N++GS++C C++Gy+ ++ + +Ce hj01412 747 DIDECqhrhLCAHG----QCRNtEGSFQCvCDQGYRasglgDHCE 787 * hj01412 - - SM00181: domain 9 of 17, from 750 to 787: score 31.8, E = 9.1e-05 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC++++ C +G +C+++++s++C C +Gy+ ++ +++Ce hj01412 750 ECQhrhLCAHG------QCRntegSFQCvCD-QGYRAsglgdHCE 787 * hj01412 - - SM00179: domain 9 of 16, from 788 to 828: score 53.7, E = 2.4e-11 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt....rnCe<- Di+EC +++++Cq G CiN+ GSY C+Cp+G++ +++++C+ hj01412 788 DINECledksVCQRG----DCINtAGSYDCtCPDGFQlddnKTCQ 828 * hj01412 - - SM00181: domain 10 of 17, from 791 to 828: score 37.5, E = 1.8e-06 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg....rCe<- eC+++++ C+ G Ci++ +sy C+Cp +G++++++++C+ hj01412 791 ECLedksVCQRG------DCIntagSYDCtCP-DGFQLddnkTCQ 828 * hj01412 - - SM00179: domain 10 of 16, from 829 to 870: score 54.9, E = 1e-11 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- Di+EC+++++C++ G C N++GS++C C++G++ + ++r+Ce hj01412 829 DINECehpgLCGPQG---ECLNtEGSFHCvCQQGFSisadgRTCE 870 * hj01412 - - SM00181: domain 11 of 17, from 832 to 870: score 26.6, E = 0.0034 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC++++ C++ G+C+++++s++C C+ +G++ + ++++Ce hj01412 832 ECEhpgLCGPQ-----GECLntegSFHCvCQ-QGFSIsadgrTCE 870 * hj01412 - - SM00179: domain 11 of 16, from 871 to 912: score 46.2, E = 4.3e-09 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- DiDEC ++++C+ +G C N+ GS+rC C +G++ +++++ C+ hj01412 871 DIDECvnntVCDSHG---FCDNtAGSFRClCYQGFQapqdgQGCV 912 * hj01412 - - SM00181: domain 12 of 17, from 874 to 912: score 20.9, E = 0.18 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC +++ C+ + G C ++ +s++C C +G++ +++++ C+ hj01412 874 ECVnntVCDSH-----GFCDntagSFRClCY-QGFQApqdgqGCV 912 * hj01412 - - SM00179: domain 12 of 16, from 913 to 955: score 29.5, E = 0.00037 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt......rnCe D++EC+ +++C+ + C+N +GS+ C C + + ++ +++C hj01412 913 DVNECellsgVCGE----AFCENvEGSFLCvCADENQeyspmtGQCR 955 <-* hj01412 - - SM00181: domain 13 of 17, from 916 to 955: score 10.7, E = 29 *->eCa....pCsnGgtEqnGtCi....sytC.Cpg..pGytg...rCe< eC+ ++ C++ + C + ++s+ C C+++++ y+ +++C hj01412 916 ECEllsgVCGE------AFCEnvegSFLCvCADenQEYSPmtgQCR 955 -* hj01412 - - SM00179: domain 13 of 16, from 1051 to 1093: score 32.4, E = 6.3e-05 *->DiDEC......pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe D DEC ++++C nG C N+ +Y+C C++G + ++ + +C hj01412 1051 DADECllfgqeICKNG----FCLNtRPGYECyCKQGTYydpvkLQCF 1093 <-* hj01412 - - SM00181: domain 14 of 17, from 1054 to 1093: score 19.4, E = 0.49 *->eCa.....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe eC+ +++ C nG C++++++y+C C+ +G + ++ + +C hj01412 1054 ECLlfgqeICKNG------FCLntrpGYECyCK-QGTYYdpvklQCF 1093 <-* hj01412 - - SM00179: domain 14 of 16, from 1094 to 1134: score 37.1, E = 2.4e-06 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- D DEC++++ C G +C+N++GSY C C + + ++C+ hj01412 1094 DMDECqdpsSCIDG----QCVNtEGSYNCfCTHPMVldaseKRCI 1134 * hj01412 - - SM00181: domain 15 of 17, from 1097 to 1134: score 20.1, E = 0.31 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC++++ C G +C+++++sy C C + + ++ +++rC+ hj01412 1097 ECQdpsSCIDG------QCVntegSYNCfCT-HPMVLdasekRCI 1134 * hj01412 - - SM00179: domain 15 of 16, from 1248 to 1288: score 21.8, E = 0.0033 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- EC+ + C nG +C+ +Y+C+C +Gy+ ++ + +C+ hj01412 1248 QAEECgilnGCENG----RCVRvQEGYTCdCFDGYHldtakMTCV 1288 * hj01412 - - SM00181: domain 16 of 17, from 1251 to 1288: score 34.5, E = 1.5e-05 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC ++C+nG +C++ ++ytC+C +Gy++++ + +C+ hj01412 1251 ECGilnGCENG------RCVrvqeGYTCdCF-DGYHLdtakmTCV 1288 * hj01412 - - SM00179: domain 16 of 16, from 1289 to 1333: score 53.9, E = 2.1e-11 *->DiDEC........pCqnGGptgtCiN.vGSYrC.CppGyt.....rn D++EC++ +++ ++C n ++CiN++GSY+C C pGy ++++++ hj01412 1289 DVNECdelnnrmsLCKN----AKCINtDGSYKClCLPGYVpsdkpNY 1331 Ce<-* C+ hj01412 1332 CT 1333 SM00181: domain 17 of 17, from 1292 to 1333: score 34.0, E = 2e-05 *->eCa.......pCsnGgtEqnGtCi....sytC.CpgpGytg.....r eC++ +++ + C n ++Ci++++sy+C C pGy ++++++ hj01412 1292 ECDelnnrmsLCKN------AKCIntdgSYKClCL-PGYVPsdkpnY 1331 Ce<-* C hj01412 1332 CT 1333 //