hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-14040081/chunk_1/iprscan-20080812-14040081.nocrc
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Query sequence: hj01580
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     60.0    4.6e-16   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     61.9    1.9e-15   1
PF00641.9.fs Zn-finger in Ran binding protein and others     49.8    1.9e-12   1
PF00641.9.ls Zn-finger in Ran binding protein and others     51.8    2.1e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1      61   140 ..     1    74 []    60.0  4.6e-16
PF00076.12.ls   1/1      61   140 ..     1    74 []    61.9  1.9e-15
PF00641.9.fs   1/1     196   227 ..     1    32 []    49.8  1.9e-12
PF00641.9.ls   1/1     196   227 ..     1    32 []    51.8  2.1e-12

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 61 to 140: score 60.0, E = 4.6e-16
                   *->lfVgNLppdtteedLkdlFskfGpies........ikivrDttretg
                      +fV +L +++t e + d+F+++G i+ +++++++ i++ +D  retg
     hj01580    61    IFVQGLGENVTIESVADYFKQIGIIKTnkktgqpmINLYTD--RETG 105  

                   rskGfaFVeFedeedAekAldalnGkelggrelrv<-*
                   + kG a V F+d+ +A++A+d  +Gke+ g++++v   
     hj01580   106 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV    140  

PF00076.12.ls: domain 1 of 1, from 61 to 140: score 61.9, E = 1.9e-15
                   *->lfVgNLppdtteedLkdlFskfGpies........ikivrDttretg
                      +fV +L +++t e + d+F+++G i+ +++++++ i++ +D  retg
     hj01580    61    IFVQGLGENVTIESVADYFKQIGIIKTnkktgqpmINLYTD--RETG 105  

                   rskGfaFVeFedeedAekAldalnGkelggrelrv<-*
                   + kG a V F+d+ +A++A+d  +Gke+ g++++v   
     hj01580   106 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV    140  

PF00641.9.fs: domain 1 of 1, from 196 to 227: score 49.8, E = 1.9e-12
                   *->ragsdWdC.issClvqNfatstkCvaCqapkps<-*
                      rag dW+C++++C ++Nf+++++C++C+apkp+   
     hj01580   196    RAG-DWKCpNPTCENMNFSWRNECNQCKAPKPD    227  

PF00641.9.ls: domain 1 of 1, from 196 to 227: score 51.8, E = 2.1e-12
                   *->ragsdWdC.issClvqNfatstkCvaCqapkps<-*
                      rag dW+C++++C ++Nf+++++C++C+apkp+   
     hj01580   196    RAG-DWKCpNPTCENMNFSWRNECNQCKAPKPD    227  

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