hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-14100284/chunk_1/iprscan-20080812-14100284.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj01659 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04762.3.ls IKI3 family 2062.4 0 1 PF04762.3.fs IKI3 family 2060.8 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04762.3.fs 1/1 11 964 .. 1 1093 [] 2060.8 0 PF04762.3.ls 1/1 11 964 .. 1 1093 [] 2062.4 0 Alignments of top-scoring domains: PF04762.3.fs: domain 1 of 1, from 11 to 964: score 2060.8, E = 0 *->MkNLklfsekeFnNpeiatAEGteealqFalydsvqpeLfDsvvcvL M+NLklf+++eF ++i+ G++++++F s+++e++ +vL hj01659 11 MRNLKLFRTLEF--RDIQ---GPGNPQCF----SLRTEQG----TVL 44 ssinfglienKvlevsengdvsskvsfdverfviddgdgdeiisvqfLad +++++glie v++vs+ +v+++vs+++e+f+++dg+ ++i++vq+L+d hj01659 45 IGSEHGLIE--VDPVSR--EVKNEVSLVAEGFLPEDGS-GRIVGVQDLLD 89 knsicvaladGdvilvevdtvsLDPeEadlEivGnFvdnGIsaasWSpDe ++s+cva+a+Gdvil++++t+ +lE+vG+ v++GIs++sWSpD+ hj01659 90 QESVCVATASGDVILCSLSTQ-------QLECVGS-VASGISVMSWSPDQ 131 ellaLvTgqqtlllmTkdFepIaEqpLedadlekkskfVnVGWGkkETQF el++L+Tgqqtl++mTkdFepI+Eq+++++d+ ++skf++VGWG+kETQF hj01659 132 ELVLLATGQQTLIMMTKDFEPILEQQIHQDDF-GESKFITVGWGRKETQF 180 RGsegrakEREALAsLkAsGlvkqklrdptlPekideeeelevDsgkisI +Gsegr+ ++++++ ++e++l++D++++++ hj01659 181 HGSEGRQ------------------AAFQMQ----MHESALPWDDHRPQV 208 sWRGDGeyFAVSvvesepGEDDEtksikrRkirVfdREsGaLnstSEpva +WRGDG++FAVSvv++e+G +Rk+rV++RE +aL+stSEpva hj01659 209 TWRGDGQFFAVSVVCPETG---------ARKVRVWNRE-FALQSTSEPVA 248 glqhlLaWKPsGslIAsiqqsDkskdnssdIvfFERNGLrHgeFvlrfpe gl+++LaWKPsGslIAs+q D k+n++dIvfFE+NGL+Hg+F+l+f++ hj01659 249 GLGPALAWKPSGSLIASTQ--D--KPNQQDIVFFEKNGLLHGHFTLPFLK 294 DeiEDRRkvekLeWNsdSdiLAvrtsnkkkdkssiPKtCvqLWtlgNYHW De+ kv++L+WN+dS++LAv +++++++ ssiPKtCvqLWt+gNYHW hj01659 295 DEV----KVNDLLWNADSSVLAVWLEDLQREESSIPKTCVQLWTVGNYHW 340 YLKqelkfsrCGkeeivllkWdPvCGkpltLhvlkesGqilvvhfawtta YLKq+l+fs+CGk++iv+l+WdPv +p++Lhvl++++++l+++++wtt+ hj01659 341 YLKQSLSFSTCGKSKIVSLMWDPV--TPYRLHVLCQGWHYLAYDWHWTTD 388 rsvsdepddnStvvVIDGsrllvTpLslavVPPPMckysLsfpsnVndva rsv+d+++d+S+v+VIDG+r+lvT+++++vVPPPMc+y+L+fp++Vn+v+ hj01659 389 RSVGDNSSDLSNVAVIDGNRVLVTVFRQTVVPPPMCTYQLLFPHPVNQVT 438 fsshPnksnvlavtsddkiiSvltffaknsledlekldrkveisefkksl f++hP+ksn+lav++++++iSv+++++++s+++++kl+ +v++s+fk++l hj01659 439 FLAHPQKSNDLAVLDASNQISVYKCGDCPSADPTVKLG-AVGGSGFKVCL 487 ltkelekllkvsfdndedayGSsnykflssvgllaevltnlskevllach +t++lek++k++f+n+ed++ +n+++l+++++++e++++++++++++++ hj01659 488 RTPHLEKRYKIQFENNEDQD--VNPLKLGLLTWIEEDVFLAVSHSEFSPR 535 eddeptellisevkesitKPGEWflrvlsSaavdGVkallsapyknnelv ++++++++++se++e+++ +l+v+sSaavdGV+++l++++k++++v hj01659 536 SVIHHLTAASSEMDEEHG-----QLNVSSSAAVDGVIISLCCNSKTKSVV 580 fetvenGkvigynlesDksleiErSldDSGGFPVkFpepctqfevvkVde +++ ++G++++y++es +sl+i +++++SGGFPV+Fp+pctq+e+++++e hj01659 581 LQL-ADGQIFKYLWES-PSLAI-KPWKNSGGFPVRFPYPCTQTELAMIGE 627 tesEDDDiWdaevsklvvlGLtnqgrLfingslLasdvtSfsvydefANE + ++vlGLt+++r+fin++++as++tSf+vydef hj01659 628 E--------------ECVLGLTDRCRFFINDIEVASNITSFAVYDEF--- 660 VVTHLLltTksdiLqfVhlndtrfkdlqlGeesevvdhdERDEENmSYvR LLltT+s+++q+++l+d++fk+lq+G++s++v+h+E+ +R hj01659 661 ----LLLTTHSHTCQCFCLRDASFKTLQAGLSSNHVSHGEV-------LR 699 nvERGskiVavvpqkEaaVVLQapRGNLEtIyPRilVLaevRdlLdrkkY +vERGs+iV+vvpq+ +++VLQ+pRGNLE++++R+lVLa++R++Ld++++ hj01659 700 KVERGSRIVTVVPQD-TKLVLQMPRGNLEVVHHRALVLAQIRKWLDKLMF 748 keAFkvmRkhRIdLNiifDydGpdlFlenvevFvkqinrvdyLnlFlssL keAF++mRk+RI+LN i+D++ p++Fl+nve+F+kqi++v+++nlF+++L hj01659 749 KEAFECMRKLRINLNLIYDHN-PKVFLGNVETFIKQIDSVNHINLFFTEL 797 keEDvTkgkYkEtmYSslskSkkgEPAPLtekqvylskdlvDPktnKVnk keEDvTk+ mY+++++S +vyls+d+++ nK+++ hj01659 798 KEEDVTKT-----MYPAPVTS-----------SVYLSRDPDG---NKIDL 828 vcdalrkaLeshikyskkylLaIiTayvkknPpcLeeaLqkIsklqemel vcda+r+++es ++++ky+L+I+T++vkk++p+Le++Lqk+++lq++++ hj01659 829 VCDAMRAVMES--INPHKYCLSILTSHVKKTTPELEIVLQKVHELQGNAP 876 ldSSDDiRKkdavsadeaLkHLlfLVDVneLfnhALGlYDlkLAllVAqk +d +davsa+eaLk+Ll+LVDVneL++h+LG+YD++L+l+VA+k hj01659 877 SD-------PDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEK 919 SQkDPKEYLPfLneLkRkmetlrRkFrIDdyLkRYekALshLsecg<-* SQkDPKEYLPfLn+Lk kmet++++F+ID+yLkRYekA++hLs+cg hj01659 920 SQKDPKEYLPFLNTLK-KMETNYQRFTIDKYLKRYEKAIGHLSKCG 964 PF04762.3.ls: domain 1 of 1, from 11 to 964: score 2062.4, E = 0 *->MkNLklfsekeFnNpeiatAEGteealqFalydsvqpeLfDsvvcvL M+NLklf+++eF ++i+ G++++++F s+++e++ +vL hj01659 11 MRNLKLFRTLEF--RDIQ---GPGNPQCF----SLRTEQG----TVL 44 ssinfglienKvlevsengdvsskvsfdverfviddgdgdeiisvqfLad +++++glie v++vs+ +v+++vs+++e+f+++dg+ ++i++vq+L+d hj01659 45 IGSEHGLIE--VDPVSR--EVKNEVSLVAEGFLPEDGS-GRIVGVQDLLD 89 knsicvaladGdvilvevdtvsLDPeEadlEivGnFvdnGIsaasWSpDe ++s+cva+a+Gdvil++++t+ +lE+vG+ v++GIs++sWSpD+ hj01659 90 QESVCVATASGDVILCSLSTQ-------QLECVGS-VASGISVMSWSPDQ 131 ellaLvTgqqtlllmTkdFepIaEqpLedadlekkskfVnVGWGkkETQF el++L+Tgqqtl++mTkdFepI+Eq+++++d+ ++skf++VGWG+kETQF hj01659 132 ELVLLATGQQTLIMMTKDFEPILEQQIHQDDF-GESKFITVGWGRKETQF 180 RGsegrakEREALAsLkAsGlvkqklrdptlPekideeeelevDsgkisI +Gsegr+ ++++++ ++e++l++D++++++ hj01659 181 HGSEGRQ------------------AAFQMQ----MHESALPWDDHRPQV 208 sWRGDGeyFAVSvvesepGEDDEtksikrRkirVfdREsGaLnstSEpva +WRGDG++FAVSvv++e+G +Rk+rV++RE +aL+stSEpva hj01659 209 TWRGDGQFFAVSVVCPETG---------ARKVRVWNRE-FALQSTSEPVA 248 glqhlLaWKPsGslIAsiqqsDkskdnssdIvfFERNGLrHgeFvlrfpe gl+++LaWKPsGslIAs+q D k+n++dIvfFE+NGL+Hg+F+l+f++ hj01659 249 GLGPALAWKPSGSLIASTQ--D--KPNQQDIVFFEKNGLLHGHFTLPFLK 294 DeiEDRRkvekLeWNsdSdiLAvrtsnkkkdkssiPKtCvqLWtlgNYHW De+ kv++L+WN+dS++LAv +++++++ ssiPKtCvqLWt+gNYHW hj01659 295 DEV----KVNDLLWNADSSVLAVWLEDLQREESSIPKTCVQLWTVGNYHW 340 YLKqelkfsrCGkeeivllkWdPvCGkpltLhvlkesGqilvvhfawtta YLKq+l+fs+CGk++iv+l+WdPv +p++Lhvl++++++l+++++wtt+ hj01659 341 YLKQSLSFSTCGKSKIVSLMWDPV--TPYRLHVLCQGWHYLAYDWHWTTD 388 rsvsdepddnStvvVIDGsrllvTpLslavVPPPMckysLsfpsnVndva rsv+d+++d+S+v+VIDG+r+lvT+++++vVPPPMc+y+L+fp++Vn+v+ hj01659 389 RSVGDNSSDLSNVAVIDGNRVLVTVFRQTVVPPPMCTYQLLFPHPVNQVT 438 fsshPnksnvlavtsddkiiSvltffaknsledlekldrkveisefkksl f++hP+ksn+lav++++++iSv+++++++s+++++kl+ +v++s+fk++l hj01659 439 FLAHPQKSNDLAVLDASNQISVYKCGDCPSADPTVKLG-AVGGSGFKVCL 487 ltkelekllkvsfdndedayGSsnykflssvgllaevltnlskevllach +t++lek++k++f+n+ed++ +n+++l+++++++e++++++++++++++ hj01659 488 RTPHLEKRYKIQFENNEDQD--VNPLKLGLLTWIEEDVFLAVSHSEFSPR 535 eddeptellisevkesitKPGEWflrvlsSaavdGVkallsapyknnelv ++++++++++se++e+++ +l+v+sSaavdGV+++l++++k++++v hj01659 536 SVIHHLTAASSEMDEEHG-----QLNVSSSAAVDGVIISLCCNSKTKSVV 580 fetvenGkvigynlesDksleiErSldDSGGFPVkFpepctqfevvkVde +++ ++G++++y++es +sl+i +++++SGGFPV+Fp+pctq+e+++++e hj01659 581 LQL-ADGQIFKYLWES-PSLAI-KPWKNSGGFPVRFPYPCTQTELAMIGE 627 tesEDDDiWdaevsklvvlGLtnqgrLfingslLasdvtSfsvydefANE + ++vlGLt+++r+fin++++as++tSf+vydef hj01659 628 E--------------ECVLGLTDRCRFFINDIEVASNITSFAVYDEF--- 660 VVTHLLltTksdiLqfVhlndtrfkdlqlGeesevvdhdERDEENmSYvR LLltT+s+++q+++l+d++fk+lq+G++s++v+h+E+ +R hj01659 661 ----LLLTTHSHTCQCFCLRDASFKTLQAGLSSNHVSHGEV-------LR 699 nvERGskiVavvpqkEaaVVLQapRGNLEtIyPRilVLaevRdlLdrkkY +vERGs+iV+vvpq+ +++VLQ+pRGNLE++++R+lVLa++R++Ld++++ hj01659 700 KVERGSRIVTVVPQD-TKLVLQMPRGNLEVVHHRALVLAQIRKWLDKLMF 748 keAFkvmRkhRIdLNiifDydGpdlFlenvevFvkqinrvdyLnlFlssL keAF++mRk+RI+LN i+D++ p++Fl+nve+F+kqi++v+++nlF+++L hj01659 749 KEAFECMRKLRINLNLIYDHN-PKVFLGNVETFIKQIDSVNHINLFFTEL 797 keEDvTkgkYkEtmYSslskSkkgEPAPLtekqvylskdlvDPktnKVnk keEDvTk+ mY+++++S +vyls+d+++ nK+++ hj01659 798 KEEDVTKT-----MYPAPVTS-----------SVYLSRDPDG---NKIDL 828 vcdalrkaLeshikyskkylLaIiTayvkknPpcLeeaLqkIsklqemel vcda+r+++es ++++ky+L+I+T++vkk++p+Le++Lqk+++lq++++ hj01659 829 VCDAMRAVMES--INPHKYCLSILTSHVKKTTPELEIVLQKVHELQGNAP 876 ldSSDDiRKkdavsadeaLkHLlfLVDVneLfnhALGlYDlkLAllVAqk +d +davsa+eaLk+Ll+LVDVneL++h+LG+YD++L+l+VA+k hj01659 877 SD-------PDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEK 919 SQkDPKEYLPfLneLkRkmetlrRkFrIDdyLkRYekALshLsecg<-* SQkDPKEYLPfLn+Lk kmet++++F+ID+yLkRYekA++hLs+cg hj01659 920 SQKDPKEYLPFLNTLK-KMETNYQRFTIDKYLKRYEKAIGHLSKCG 964 //