hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-14155754/chunk_1/iprscan-20080812-14155754.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj01700 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00625.11.fs Guanylate kinase 141.7 1.9e-39 1 PF00625.11.ls Guanylate kinase 141.6 2e-39 1 PF09060.1.fs L27_N 100.2 4.6e-28 1 PF09060.1.ls L27_N 102.2 1.4e-27 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 49.0 4.2e-13 1 PF07653.7.fs Variant SH3 domain 46.4 1e-12 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 50.9 4e-12 1 PF07653.7.ls Variant SH3 domain 48.3 2.5e-11 1 PF00018.18.fs SH3 domain 21.7 3.8e-05 1 PF02828.7.fs L27 domain 17.6 0.00034 1 PF02828.7.ls L27 domain 19.6 0.0034 1 PF00018.18.ls SH3 domain 5.4 0.0051 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF09060.1.fs 1/1 125 173 .. 1 49 [] 100.2 4.6e-28 PF09060.1.ls 1/1 125 173 .. 1 49 [] 102.2 1.4e-27 PF02828.7.ls 1/1 188 240 .. 1 56 [] 19.6 0.0034 PF02828.7.fs 1/1 188 240 .. 1 56 [] 17.6 0.00034 PF00595.14.ls 1/1 258 335 .. 1 86 [] 50.9 4e-12 PF00595.14.fs 1/1 258 335 .. 1 86 [] 49.0 4.2e-13 PF00018.18.ls 1/1 350 417 .. 1 59 [] 5.4 0.0051 PF07653.7.ls 1/1 351 417 .. 1 69 [] 48.3 2.5e-11 PF07653.7.fs 1/1 351 417 .. 1 69 [] 46.4 1e-12 PF00018.18.fs 1/1 373 394 .. 17 39 .. 21.7 3.8e-05 PF00625.11.fs 1/1 517 607 .. 1 93 [. 141.7 1.9e-39 PF00625.11.ls 1/1 517 623 .. 1 107 [] 141.6 2e-39 Alignments of top-scoring domains: PF09060.1.fs: domain 1 of 1, from 125 to 173: score 100.2, E = 4.6e-28 *->elEeLllSLKqvqhcLtDsQSQeDiELvlqLlqkeDFqaAfsihnAV e+E+L +SLK +qh+L+DsQSQeDi L+lqL+q++DFq+Af+ihnA+ hj01700 125 EIEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNKDFQNAFKIHNAI 171 Aq<-* + hj01700 172 TV 173 PF09060.1.ls: domain 1 of 1, from 125 to 173: score 102.2, E = 1.4e-27 *->elEeLllSLKqvqhcLtDsQSQeDiELvlqLlqkeDFqaAfsihnAV e+E+L +SLK +qh+L+DsQSQeDi L+lqL+q++DFq+Af+ihnA+ hj01700 125 EIEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNKDFQNAFKIHNAI 171 Aq<-* + hj01700 172 TV 173 PF02828.7.ls: domain 1 of 1, from 188 to 240: score 19.6, E = 0.0034 *->avqralelLeeLqslleaseedlaeLrkiLqsphlqsLlevHDkvae a +a+e+++ L + ++ ++ +eL +L++ph q+Ll +HDkvae hj01700 188 AQDLAQEVQTVLKP--VHH-KEGQELTALLNTPHIQALLLAHDKVAE 231 kvydppspe<-* ++ + ++ + hj01700 232 QEMQLEPIT 240 PF02828.7.fs: domain 1 of 1, from 188 to 240: score 17.6, E = 0.00034 *->avqralelLeeLqslleaseedlaeLrkiLqsphlqsLlevHDkvae a +a+e+++ L + ++ ++ +eL +L++ph q+Ll +HDkvae hj01700 188 AQDLAQEVQTVLKP--VHH-KEGQELTALLNTPHIQALLLAHDKVAE 231 kvydppspe<-* ++ + ++ + hj01700 232 QEMQLEPIT 240 PF00595.14.ls: domain 1 of 1, from 258 to 335: score 50.9, E = 4e-12 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v++ek + +lG +++ + d ++++s++++G gaAe++G L hj01700 258 IVRIEKA-RDIPLGATVRNEMD-----SVIISRIVKG-GAAEKSGLL 297 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD +l++NG +++ + e+ ++l + +g ++t +++ hj01700 298 HEGDEVLEINGIEIRGKDVNEVFDLLSDMHG-TLTFVLI 335 PF00595.14.fs: domain 1 of 1, from 258 to 335: score 49.0, E = 4.2e-13 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v++ek + +lG +++ + d ++++s++++G gaAe++G L hj01700 258 IVRIEKA-RDIPLGATVRNEMD-----SVIISRIVKG-GAAEKSGLL 297 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD +l++NG +++ + e+ ++l + +g ++t +++ hj01700 298 HEGDEVLEINGIEIRGKDVNEVFDLLSDMHG-TLTFVLI 335 PF00018.18.ls: domain 1 of 1, from 350 to 417: score 5.4, E = 0.0051 *->kkvvALYDYeare.......sdELsFkkGDvitvleksddpgWWkgr v+A +DY++++++ + ++ LsF+kGD+++v++++d +WW + hj01700 350 IHVKAHFDYDPSDdpyvpcrELGLSFQKGDILHVISQEDP-NWWQAY 395 lkgtgG......keGliPsNYVepv<-* + G++++++ Gl+P + hj01700 396 RE---GdednqpLAGLVPGKSFQQQ 417 PF07653.7.ls: domain 1 of 1, from 351 to 417: score 48.3, E = 2.5e-11 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww +++a++dy++ +d + + e Ls++kGd+++Vi s++d++ww hj01700 351 HVKAHFDYDP-SDDPYVPcRELGLSFQKGDILHVI----SQEDPNWW 392 egeslggGrr.r...RGlvPssaveel<-* ++++ +G ++ ++ GlvP ++ + + hj01700 393 QAYR--EGDEdNqplAGLVPGKSFQQQ 417 PF07653.7.fs: domain 1 of 1, from 351 to 417: score 46.4, E = 1e-12 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww +++a++dy++ +d + + e Ls++kGd+++Vi s++d++ww hj01700 351 HVKAHFDYDP-SDDPYVPcRELGLSFQKGDILHVI----SQEDPNWW 392 egeslggGrr.r...RGlvPssaveel<-* ++++ +G ++ ++ GlvP ++ + + hj01700 393 QAYR--EGDEdNqplAGLVPGKSFQQQ 417 PF00018.18.fs: domain 1 of 1, from 373 to 394: score 21.7, E = 3.8e-05 *->LsFkkGDvitvleksddpgWWkg<-* LsF+kGD+++v++++d +WW + hj01700 373 LSFQKGDILHVISQEDP-NWWQA 394 PF00625.11.fs: domain 1 of 1, from 517 to 607: score 141.7, E = 1.9e-39 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk TR R Ev G+DYhFVs r ++e+dI+a++F+E++ef+ N+YGTs hj01700 517 TRSRRDQEVAGRDYHFVS-RQAFEADIAAGKFIEHGEFEKNLYGTSI 562 eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqel<-* +Vrqv+ sGkic+L + Q +k lr+ +l P+++FIaPpS++ l hj01700 563 DSVRQVINSGKICLLSLRTQSLKTLRNSDLK-PYIIFIAPPSQERL 607 PF00625.11.ls: domain 1 of 1, from 517 to 623: score 141.6, E = 2e-39 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk TR R Ev G+DYhFVs r ++e+dI+a++F+E++ef+ N+YGTs hj01700 517 TRSRRDQEVAGRDYHFVS-RQAFEADIAAGKFIEHGEFEKNLYGTSI 562 eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelekrL +Vrqv+ sGkic+L + Q +k lr+ +l P+++FIaPpS++ l L hj01700 563 DSVRQVINSGKICLLSLRTQSLKTLRNSDLK-PYIIFIAPPSQERLRALL 611 ..rgrnketEEs<-* ++g n EE hj01700 612 akEGKNPKPEEL 623 //