hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-14155754/chunk_1/iprscan-20080812-14155754.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hj01700
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00072                                                 227.3    1.3e-63   1
SM00569                                                  86.1    4.3e-21   2
SM00228                                                  58.6    7.9e-13   1
SM00326                                                  50.6      2e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00569    1/2     125   182 ..     1    62 []    42.3  6.4e-08
SM00569    2/2     188   240 ..     1    62 []    43.8  2.4e-08
SM00228    1/1     267   338 ..     1    80 []    58.6  7.9e-13
SM00326    1/1     350   418 ..     1    58 []    50.6    2e-10
SM00072    1/1     480   665 ..     1   203 []   227.3  1.3e-63

Alignments of top-scoring domains:
SM00569: domain 1 of 2, from 125 to 182: score 42.3, E = 6.4e-08
                   *->avqlllevLeeLqsllepkedrqedlqeLrrlLqsmFsphlqaLlki
                        + l ++L+++q++l +++++ ed++ L++l q+   + +q+ +ki
     hj01700   125    EIEDLFSSLKHIQHTLVDSQSQ-EDISLLLQLVQN---KDFQNAFKI 167  

                   HDkvaeteydpplpp<-*
                   H+++  ++ ++++p    
     hj01700   168 HNAITVHMNKASPPF    182  

SM00569: domain 2 of 2, from 188 to 240: score 43.8, E = 2.4e-08
                   *->avqlllevLeeLqsllepkedrqedlqeLrrlLqsmFsphlqaLlki
                      a+ l++ev + L++ ++      ++ qeL  lL++   ph qaLl +
     hj01700   188    AQDLAQEVQTVLKPVHH------KEGQELTALLNT---PHIQALLLA 225  

                   HDkvaeteydpplpp<-*
                   HDkvae+e++++++    
     hj01700   226 HDKVAEQEMQLEPIT    240  

SM00228: domain 1 of 1, from 267 to 338: score 58.6, E = 7.9e-13
                   *->gglGfsivg...gifvssvvpGspAakaGrkslglLkvGDvIleVNG
                       +lG +++ + + +++s++v+G++A+k+G     lL++GD++le+NG
     hj01700   267    IPLGATVRNemdSVIISRIVKGGAAEKSG-----LLHEGDEVLEING 308  

                   etsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                    + ++g++  e+ dll    g     ++t+++++     
     hj01700   309 -IEIRGKDVNEVFDLLSDMHG-----TLTFVLIPSQ    338  

SM00326: domain 1 of 1, from 350 to 418: score 50.6, E = 2e-10
                   *->eyvvAlYDyea.......qnedELsFkkGDiitvleksddgWweGel
                       +v+A +Dy++++++  ++ e  LsF+kGDi++v++++d++Ww++ +
     hj01700   350    IHVKAHFDYDPsddpyvpCRELGLSFQKGDILHVISQEDPNWWQAYR 396  

                   nr....tGkeGlfPsnYVeeie<-*
                    +++++    Gl+P+   + ++   
     hj01700   397 EGdednQPLAGLVPGKSFQQQR    418  

SM00072: domain 1 of 1, from 480 to 665: score 227.3, E = 1.3e-63
                   *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE
                      + Rpi+L+Gp+  G   l+++L+ ++ d  +f+ +V+hTTR++R  E
     hj01700   480    RKRPIILIGPQNCGQNELRQRLMNKEKD--RFASAVPHTTRSRRDQE 524  

                   vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnlyYGTskesvrqvae
                   v G  +DYhFvs +++fe di++gkf+E+ge++ n +YGTs++svrqv++
     hj01700   525 VAG--RDYHFVS-RQAFEADIAAGKFIEHGEFEKN-LYGTSIDSVRQVIN 570  

                   kGKhclLDidpqgvkqlkkarRkselnpiviFIapPsleeleerlrgaeq
                   +GK+clL    q++k l+++    +l p++iFIapPs+e l+ +l  a++
     hj01700   571 SGKICLLSLRTQSLKTLRNS----DLKPYIIFIAPPSQERLRALL--AKE 614  

                   RgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddledayYkeLke
                      ++ e++ +  +   ++ +q  +   h+Fd+ ivn+dl++ay +eL+ 
     hj01700   615 GKNPKPEELREIIEK-TREMEQNNG---HYFDTAIVNSDLDKAY-QELLR 659  

                   ileaeq<-*
                   +++++    
     hj01700   660 LINKLD    665  

//