hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-14220903/chunk_1/iprscan-20080812-14220903.nocrc
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Query sequence: hj01721
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00148                                                 280.0    1.8e-79   1
SM00149                                                 265.6    3.9e-75   1
SM00239                                                  63.4    2.9e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00148    1/1     331   481 ..     1   182 []   280.0  1.8e-79
SM00149    1/1     583   699 ..     1   119 []   265.6  3.9e-75
SM00239    1/1     720   819 ..     1    92 []    63.4  2.9e-14

Alignments of top-scoring domains:
SM00148: domain 1 of 1, from 331 to 481: score 280.0, E = 1.8e-79
                   *->qDmdkPLshYfInsSHNsGtfkidiFPFGLDAPEKLRLPPYVTFLLR
                      q md PL+hYfI+sSHN                              
     hj01721   331    QEMDHPLAHYFISSSHN------------------------------ 347  

                   FTYLtgkQlwgessvegYiqaLkaGcRcvELDcwd..gpdgePviyHGhT
                    TYLtg+Q++g+ssve+Y+q+L aGcRcvELDcwd++g+d+eP+i+HG  
     hj01721   348 -TYLTGRQFGGKSSVEMYRQVLLAGCRCVELDCWDgkGEDQEPIITHGKA 396  

                   ftskikLsdVleaIKkfAFvtSpyPEFvIlSLenHcspdqQakmaqmfke
                   + + i ++dV++aIK+ AFvtS+yP  vIlS+enHcs  qQ km ++++ 
     hj01721   397 MCTDILFKDVIQAIKETAFVTSEYP--VILSFENHCSKYQQYKMSKYCED 444  

                   iFgdlLytkPltsseeypgsnLPsPeqLkgKILLkgK<-*
                   +FgdlL+   l+s+  +pg  LPsP++Lk+KIL+k+K   
     hj01721   445 LFGDLLLKQALESHPLEPGRALPSPNDLKRKILIKNK    481  

SM00149: domain 1 of 1, from 583 to 699: score 265.6, E = 3.9e-75
                   *->lseLvsycapvkFrsfelaeekdnafyemsSfsEtkaakkllekapt
                      ls++++y++pvkF++f+ aee+ n++y+msSf+E+     +l+++++
     hj01721   583    LSTMINYAQPVKFQGFHVAEER-NIHYNMSSFNESV-GLGYLKTHAI 627  

                   dfvryNqrqLsRvYPkGtRvDSSNYnPqvfWnaGcQMVALNfQTpDkaMq
                   +fv+yN+rq+sR+YPkG RvDSSNY+Pq+fWnaGcQMV LN+QTpD+aMq
     hj01721   628 EFVNYNKRQMSRIYPKGGRVDSSNYMPQIFWNAGCQMVSLNYQTPDLAMQ 677  

                   lNqGmFraNGgCGYVLKPefLR<-*
                   lNqG+F++NG CGY+LKP+f+R   
     hj01721   678 LNQGKFEYNGSCGYLLKPDFMR    699  

SM00239: domain 1 of 1, from 720 to 819: score 63.4, E = 2.9e-14
                   *->tLtvkiisArnLp....DPYVkvs.............kTkvvkktls
                      t  v +is++ L +++   YV+v   + ++++ ++  +T+ v +++ 
     hj01721   720    TCSVQVISGQFLSdkkiGTYVEVDmyglptdtirkefRTRMVMNNG- 765  

                   gfNPvWnEesetFeFevpp....s.LeieVyDk..dfiGrvtippnnahq
                    +NPv+nEe  +F+F  +  ++ + L+i VyD+++++iG+ ++p      
     hj01721   766 -LNPVYNEE--SFVFRKVIlpdlAvLRIAVYDDnnKLIGQRILP------ 806  

                   hsadglihlsell.ggrh.kl<-*
                           l+ l+ g+rh  l   
     hj01721   807 --------LDGLQaGYRHiSL    819  

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