hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-14280964/chunk_1/iprscan-20080812-14280964.nocrc
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Query sequence: hj01740
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF03372.13.ls Endonuclease/Exonuclease/phosphatase fa   192.1    1.2e-54   1
PF03372.13.fs Endonuclease/Exonuclease/phosphatase fa   190.2    4.6e-54   1
PF00620.17.fs RhoGAP domain                             123.8      3e-36   1
PF00620.17.ls RhoGAP domain                             125.7    1.2e-34   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF03372.13.fs   1/1     304   593 ..     1   198 []   190.2  4.6e-54
PF03372.13.ls   1/1     304   593 ..     1   198 []   192.1  1.2e-54
PF00620.17.fs   1/1     797   939 ..     1   155 []   123.8    3e-36
PF00620.17.ls   1/1     797   939 ..     1   155 []   125.7  1.2e-34

Alignments of top-scoring domains:
PF03372.13.fs: domain 1 of 1, from 304 to 593: score 190.2, E = 4.6e-54
                   *->lkiltwNvnglra.l.s...llellk.edpDvicLQEvklsp.s.ll
                      ++++twNvng++++++++++l    +++d++ i++QE +ls +  ++
     hj01740   304    FFVGTWNVNGQSPdSgLepwLNCDPNpPDIYCIGFQELDLSTeAfFY 350  

                   .l.lg.gyv.........................................
                     + +++ ++    ++ +++ + ++ +  +  +       ++++ +  ++
     hj01740   351 fEsVKeQEWsmaverglhskakykkvqlvrlvgmmllifarkdqcryird 400  

                   ......ytgfgg.gggkgGvailsklplvsvigidlirvilasgt.fvvv
                     + + +tg+ g+ g+kgGva+++ ++                +t+f++v
     hj01740   401 iatetvGTGIMGkMGNKGGVAVRFVFH----------------NTtFCIV 434  

                   ntHlpagg.rldeRlaqyaelldflsf.............ksdpvilcGD
                   n+Hl+a+ +++++R+++y++++ ++sf  ++++ ++ +  k++ vi++GD
     hj01740   435 NSHLAAHVeDFERRNQDYKDICARMSFvvpnqtlpqlnimKHEVVIWLGD 484  

                   fNarpdeids.llk.igkstl........................elpit
                   +N+r+ ++d +  k++ + ++ ++  + ++ + ++++++   + +e++i+
     hj01740   485 LNYRLCMPDAnEVKsLINKKDlqrllkfdqlniqrtqkkafvdfnEGEIK 534  

                   fppTywsyrgt.....sekkntgsrlDrilvsg.ll.rv.il.illevlg
                   f pTy+++  t++ ++s k+++++++Dril++g+ ++++++ + +++ + 
     hj01740   535 FIPTYKYDSKTdrwdsSGKCRVPAWCDRILWRGtNVnQLnYRsHMEL-KT 583  

                   SDHrPVlatl<-*
                   SDH+PV a +   
     hj01740   584 SDHKPVSALF    593  

PF03372.13.ls: domain 1 of 1, from 304 to 593: score 192.1, E = 1.2e-54
                   *->lkiltwNvnglra.l.s...llellk.edpDvicLQEvklsp.s.ll
                      ++++twNvng++++++++++l    +++d++ i++QE +ls +  ++
     hj01740   304    FFVGTWNVNGQSPdSgLepwLNCDPNpPDIYCIGFQELDLSTeAfFY 350  

                   .l.lg.gyv.........................................
                     + +++ ++    ++ +++ + ++ +  +  +       ++++ +  ++
     hj01740   351 fEsVKeQEWsmaverglhskakykkvqlvrlvgmmllifarkdqcryird 400  

                   ......ytgfgg.gggkgGvailsklplvsvigidlirvilasgt.fvvv
                     + + +tg+ g+ g+kgGva+++ ++                +t+f++v
     hj01740   401 iatetvGTGIMGkMGNKGGVAVRFVFH----------------NTtFCIV 434  

                   ntHlpagg.rldeRlaqyaelldflsf.............ksdpvilcGD
                   n+Hl+a+ +++++R+++y++++ ++sf  ++++ ++ +  k++ vi++GD
     hj01740   435 NSHLAAHVeDFERRNQDYKDICARMSFvvpnqtlpqlnimKHEVVIWLGD 484  

                   fNarpdeids.llk.igkstl........................elpit
                   +N+r+ ++d +  k++ + ++ ++  + ++ + ++++++   + +e++i+
     hj01740   485 LNYRLCMPDAnEVKsLINKKDlqrllkfdqlniqrtqkkafvdfnEGEIK 534  

                   fppTywsyrgt.....sekkntgsrlDrilvsg.ll.rv.il.illevlg
                   f pTy+++  t++ ++s k+++++++Dril++g+ ++++++ + +++ + 
     hj01740   535 FIPTYKYDSKTdrwdsSGKCRVPAWCDRILWRGtNVnQLnYRsHMEL-KT 583  

                   SDHrPVlatl<-*
                   SDH+PV a +   
     hj01740   584 SDHKPVSALF    593  

PF00620.17.fs: domain 1 of 1, from 797 to 939: score 123.8, E = 3e-36
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P+ ++ ++++l k+++++E +++ +G + +++++ +++d+       
     hj01740   797    PKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIP---- 839  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   ++   + h+vA +L  FL  LPeP++++ely++++      +++ +  + 
     hj01740   840 ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCL------DSAYDP-RI 882  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                   +r+++++LP+++r+++ryL+a+L++  ++se N  +a+ +A+ F   Llr
     hj01740   883 CRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 932  

                   ppdgdsad<-*
                   pp+  ++    
     hj01740   933 PPPN-LMA    939  

PF00620.17.ls: domain 1 of 1, from 797 to 939: score 125.7, E = 1.2e-34
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P+ ++ ++++l k+++++E +++ +G + +++++ +++d+       
     hj01740   797    PKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIP---- 839  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   ++   + h+vA +L  FL  LPeP++++ely++++      +++ +  + 
     hj01740   840 ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCL------DSAYDP-RI 882  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                   +r+++++LP+++r+++ryL+a+L++  ++se N  +a+ +A+ F   Llr
     hj01740   883 CRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 932  

                   ppdgdsad<-*
                   pp+  ++    
     hj01740   933 PPPN-LMA    939  

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