hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-14280964/chunk_1/iprscan-20080812-14280964.nocrc
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Query sequence: hj01740
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00128                                                 534.0   6.4e-156   1
SM00324                                                 150.0    2.5e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00128    1/1     300   601 ..     1   435 []   534.0 6.4e-156
SM00324    1/1     794   958 ..     1   193 []   150.0  2.5e-40

Alignments of top-scoring domains:
SM00128: domain 1 of 1, from 300 to 601: score 534.0, E = 6.4e-156
                   *->rdikvlvgTwNvngqfkrseadpkvdvtswLfqkidkedevkqsekp
                      ++++++vgTwNvngq+      p++ +++wL++++         ++p
     hj01740   300    QTFRFFVGTWNVNGQS------PDSGLEPWLNCDP---------NPP 331  

                   DiyviGlQEvggkkyeesilqvdkivkellsnalkkkillrsfeleagsi
                   Diy+iG+QE+                                 +l+++++
     hj01740   332 DIYCIGFQEL---------------------------------DLSTEAF 348  

                   lesiaakerlWsellesslnevsgksqynvlaserelvgilllvfvkane
                   ++++++ke++Ws+++e++l++   k +y++++ +r+++++ll++ +k+++
     hj01740   349 FYFESVKEQEWSMAVERGLHS---KAKYKKVQLVRLVGMMLLIFARKDQC 395  

                   lkkikdvevktvktGmggltGnKGavaVrfklhdtEgqysfcfVNsHLaa
                   + +i+d++++tv+tG++g++GnKG+vaVrf +h+t    +fc+VNsHLaa
     hj01740   396 R-YIRDIATETVGTGIMGKMGNKGGVAVRFVFHNT----TFCIVNSHLAA 440  

                   gesNLanveqRnqdYktIrlralsFperketsqrnrflevgkdnIldhdv
                   + +   ++e+RnqdYk+I + ++sF+ +++t +++        nI++h+v
     hj01740   441 HVE---DFERRNQDYKDI-CARMSFVVPNQTLPQL--------NIMKHEV 478  

                   vFWfGDLNyRldspsylevlvadaeqqtvlAddlnliaaeldvirkvsee
                   v+W+GDLNyRl++p+                                 +e
     hj01740   479 VIWLGDLNYRLCMPDA--------------------------------NE 496  

                   vrrkIskkekevfdeLlekdQLnrqkeagkvFkgFqEgkIkFpPTYKydr
                   v+++I+kk+   +++Ll++dQLn+q++++k+F +F+Eg+IkF PTYKyd 
     hj01740   497 VKSLINKKD---LQRLLKFDQLNIQRTQKKAFVDFNEGEIKFIPTYKYD- 542  

                   edsvgtetYDtsEKkRvPAWcDRILyrsKrqfeaapnliqlsesyfpvvs
                       +t+++D+s+K+RvPAWcDRIL+r       ++n++ql+        
     hj01740   543 ---SKTDRWDSSGKCRVPAWCDRILWR-------GTNVNQLN-------- 574  

                   siyqeekvvtyyysgmelttSDHkPVfAtFrlkvkkvd<-*
                              y+s+mel+tSDHkPV+A+F+++vk+vd   
     hj01740   575 -----------YRSHMELKTSDHKPVSALFHIGVKVVD    601  

SM00324: domain 1 of 1, from 794 to 958: score 150.0, E = 2.5e-40
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                       ++P++++ ++++l k++ ++e +++ +G + +++++ +++d++ ++
     hj01740   794    LQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPe 840  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                   +                  + h+vA +L  +L  LPeP++++ely+++++
     hj01740   841 T---------------IPGSNHSVAEALLIFLEALPEPVICYELYQRCLD 875  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                    a +                     r +r+++s+LP+++r+++ryL+ +L
     hj01740   876 SAYD--------------------PRICRQVISQLPRCHRNVFRYLMaFL 905  

                   nrVaehsevNkMtarNLAivFgPtLlrpp.....ltdikhqnkvvetlie
                   +++ ++se N  +a+  A+ F+ +Llrpp++    +  +  ++ +++l+ 
     hj01740   906 RELLKFSEYNSVNANMIATLFTSLLLRPPpnlmaRQTPSDRQRAIQFLLG 955  

                   nad<-*
                     +   
     hj01740   956 FLL    958  

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