hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-14400508/chunk_1/iprscan-20080812-14400508.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj01819 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06957.2.ls Coatomer (COPI) alpha subunit C-terminu 1092.9 0 1 PF06957.2.fs Coatomer (COPI) alpha subunit C-terminu 1090.9 0 1 PF04053.4.ls Coatomer WD associated region 957.7 4.3e-285 1 PF04053.4.fs Coatomer WD associated region 955.6 1.8e-284 1 PF00400.22.ls WD domain, G-beta repeat 226.0 7.6e-65 7 PF00400.22.fs WD domain, G-beta repeat 217.6 2.6e-62 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00400.22.fs 1/6 1 38 [. 2 38 .] 14.3 0.0046 PF00400.22.ls 2/7 42 80 .. 1 38 [] 40.8 4.2e-09 PF00400.22.fs 2/6 42 80 .. 1 38 [] 38.9 5.6e-10 PF00400.22.fs 3/6 84 122 .. 1 38 [] 39.1 4.9e-10 PF00400.22.ls 3/7 84 122 .. 1 38 [] 41.0 3.7e-09 PF00400.22.fs 4/6 126 164 .. 1 38 [] 48.7 9.6e-13 PF00400.22.ls 4/7 126 164 .. 1 38 [] 50.6 4.7e-12 PF00400.22.fs 5/6 196 234 .. 1 38 [] 41.2 1.2e-10 PF00400.22.ls 5/7 196 234 .. 1 38 [] 43.2 8.4e-10 PF00400.22.fs 6/6 240 278 .. 1 38 [] 35.5 5e-09 PF00400.22.ls 6/7 240 278 .. 1 38 [] 37.4 4.4e-08 PF04053.4.ls 1/1 339 783 .. 1 475 [] 957.7 4.3e-285 PF04053.4.fs 1/1 339 783 .. 1 475 [] 955.6 1.8e-284 PF06957.2.fs 1/1 808 1225 .] 1 444 [] 1090.9 0 PF06957.2.ls 1/1 808 1225 .] 1 444 [] 1092.9 0 Alignments of top-scoring domains: PF00400.22.fs: domain 1 of 6, from 1 to 38: score 14.3, E = 0.0046 *->eck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* e ++ ++ ++ V ++f+p +p+++++ ++g i +Wd hj01819 1 EMLtKFeTKSARVKGLSFHPK-RPWILTSLHNGVIQLWD 38 PF00400.22.ls: domain 2 of 7, from 42 to 80: score 40.8, E = 4.2e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++++ ++ H ++V+ ++f+ +pl++sg++D +ik+W+ hj01819 42 CTLIdKFdEHDGPVRGIDFHKQ-QPLFVSGGDDYKIKVWN 80 PF00400.22.fs: domain 2 of 6, from 42 to 80: score 38.9, E = 5.6e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++++ ++ H ++V+ ++f+ +pl++sg++D +ik+W+ hj01819 42 CTLIdKFdEHDGPVRGIDFHKQ-QPLFVSGGDDYKIKVWN 80 PF00400.22.fs: domain 3 of 6, from 84 to 122: score 39.1, E = 4.9e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + c+ +l gH + ++ f+++ +p+++s+S+D ti++W+ hj01819 84 RRCLfTLlGHLDYIRTTFFHHE-YPWILSASDDQTIRVWN 122 PF00400.22.ls: domain 3 of 7, from 84 to 122: score 41.0, E = 3.7e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + c+ +l gH + ++ f+++ +p+++s+S+D ti++W+ hj01819 84 RRCLfTLlGHLDYIRTTFFHHE-YPWILSASDDQTIRVWN 122 PF00400.22.fs: domain 4 of 6, from 126 to 164: score 48.7, E = 9.6e-13 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++c+ vl+gH++ V+c f+p l++s+S D t+++Wd hj01819 126 RTCVcVLtGHNHYVMCAQFHPT-EDLVVSASLDQTVRVWD 164 PF00400.22.ls: domain 4 of 7, from 126 to 164: score 50.6, E = 4.7e-12 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++c+ vl+gH++ V+c f+p l++s+S D t+++Wd hj01819 126 RTCVcVLtGHNHYVMCAQFHPT-EDLVVSASLDQTVRVWD 164 PF00400.22.fs: domain 5 of 6, from 196 to 234: score 41.2, E = 1.2e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +k+vl+gH +V+ af+p +pl++sg +D+ +kiW hj01819 196 AVVKhVLeGHDRGVNWAAFHPT-MPLIVSGADDRQVKIWR 234 PF00400.22.ls: domain 5 of 7, from 196 to 234: score 43.2, E = 8.4e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +k+vl+gH +V+ af+p +pl++sg +D+ +kiW hj01819 196 AVVKhVLeGHDRGVNWAAFHPT-MPLIVSGADDRQVKIWR 234 PF00400.22.fs: domain 6 of 6, from 240 to 278: score 35.5, E = 5e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++ +gH + V+c f+p ++l++s S+D++i++Wd hj01819 240 AWEVdTCrGHYNNVSCAVFHPR-QELILSNSEDKSIRVWD 278 PF00400.22.ls: domain 6 of 7, from 240 to 278: score 37.4, E = 4.4e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++ +gH + V+c f+p ++l++s S+D++i++Wd hj01819 240 AWEVdTCrGHYNNVSCAVFHPR-QELILSNSEDKSIRVWD 278 PF04053.4.ls: domain 1 of 1, from 339 to 783: score 957.7, E = 4.3e-285 *->eseiqqadfktikdsleevtDGevLpLrvkelgSleiypqslsYNPn +++++q+df++ kd+ +v++Lr+++ +++++++sYNP+ hj01819 339 DRFLRQLDFNSSKDV-------AVMQLRSGS----KFPVFNMSYNPA 374 grfVlvcgRtsdgEygiYtllalrkkafGaaeeFVWapdskeyAvreavf +++Vl+c+R+s++E+++Y+l++++k+a+ ++ ++ p+ k++++ +av+ hj01819 375 ENAVLLCTRASNLENSTYDLYTIPKDADSQNPDA---PEGKRSSGLTAVW 421 vaRnrFknFkkktqsvsvrdlankitkgillgvksvddIfFagwgsllLi vaRnrF++++++ +s+++++l+n+itk+++++ ++d+If+ag+g+llL+ hj01819 422 VARNRFAVLDRM-HSLLIKNLKNEITKKVQVP--NCDEIFYAGTGNLLLR 468 rrieVtlkdVQqkdsgelVaisnvknGDEASFYVlwsnddqvvallskHt + +++tl+dVQqk+++++V+is+vk YV+ws+d+++vall kH+ hj01819 469 DADSITLFDVQQKRTLASVKISKVK-------YVIWSADMSHVALLAKHA 511 itieegkleafevlhEvterVKSGaWdgdgViiyttlNhIkYyvgNGdig i+i+++kl+a++++hE ++rVKSGaWd++gV+iytt+NhIkY+v++Gd+g hj01819 512 IVICNRKLDALCNIHE-NIRVKSGAWDESGVFIYTTSNHIKYAVTTGDHG 560 iIrtLDrplYLlgvlgkdnrVYClDRelnvisytIdlseyeFKtAlvRrd iIrtLD+p+Y+++v+g n+VYClDRe++++++tId++e++FK+Al++r+ hj01819 561 IIRTLDLPIYVTRVKG--NNVYCLDRECRPRVLTIDPTEFKFKLALINRK 608 fdevlelvlptsplvgrqsiihYLqkkGYpEiALqfvkDpdtRFeLALel +devl+ ++++++lvg qsii+YLqkkGYpE+AL+fvkD++tRF LALe+ hj01819 609 YDEVLH-MVRNAKLVG-QSIIAYLQKKGYPEVALHFVKDEKTRFSLALEC 656 GnLeiAlelAkeldsedkWkrLGeeALlqGNfqlveeayqrakdfekLsf Gn+eiAle+Ak+ld++++W++LGe+ALlqGN+q+ve++yqr+k+f+kLsf hj01819 657 GNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSF 706 LYlitGdaekLsKlakiAeargdfngaFqnalylGdveervdiLietGrl LYlitG++ekL+K++kiAe+r+d++g++qnalylGdv erv+iL+++G+ hj01819 707 LYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQK 756 PlAyltArThGldseaesiveewkekls<-* +lAyltA+ThGld+eaes++e+++ ++ hj01819 757 SLAYLTAATHGLDEEAESLKETFDP-EK 783 PF04053.4.fs: domain 1 of 1, from 339 to 783: score 955.6, E = 1.8e-284 *->eseiqqadfktikdsleevtDGevLpLrvkelgSleiypqslsYNPn +++++q+df++ kd+ +v++Lr+++ +++++++sYNP+ hj01819 339 DRFLRQLDFNSSKDV-------AVMQLRSGS----KFPVFNMSYNPA 374 grfVlvcgRtsdgEygiYtllalrkkafGaaeeFVWapdskeyAvreavf +++Vl+c+R+s++E+++Y+l++++k+a+ ++ ++ p+ k++++ +av+ hj01819 375 ENAVLLCTRASNLENSTYDLYTIPKDADSQNPDA---PEGKRSSGLTAVW 421 vaRnrFknFkkktqsvsvrdlankitkgillgvksvddIfFagwgsllLi vaRnrF++++++ +s+++++l+n+itk+++++ ++d+If+ag+g+llL+ hj01819 422 VARNRFAVLDRM-HSLLIKNLKNEITKKVQVP--NCDEIFYAGTGNLLLR 468 rrieVtlkdVQqkdsgelVaisnvknGDEASFYVlwsnddqvvallskHt + +++tl+dVQqk+++++V+is+vk YV+ws+d+++vall kH+ hj01819 469 DADSITLFDVQQKRTLASVKISKVK-------YVIWSADMSHVALLAKHA 511 itieegkleafevlhEvterVKSGaWdgdgViiyttlNhIkYyvgNGdig i+i+++kl+a++++hE ++rVKSGaWd++gV+iytt+NhIkY+v++Gd+g hj01819 512 IVICNRKLDALCNIHE-NIRVKSGAWDESGVFIYTTSNHIKYAVTTGDHG 560 iIrtLDrplYLlgvlgkdnrVYClDRelnvisytIdlseyeFKtAlvRrd iIrtLD+p+Y+++v+g n+VYClDRe++++++tId++e++FK+Al++r+ hj01819 561 IIRTLDLPIYVTRVKG--NNVYCLDRECRPRVLTIDPTEFKFKLALINRK 608 fdevlelvlptsplvgrqsiihYLqkkGYpEiALqfvkDpdtRFeLALel +devl+ ++++++lvg qsii+YLqkkGYpE+AL+fvkD++tRF LALe+ hj01819 609 YDEVLH-MVRNAKLVG-QSIIAYLQKKGYPEVALHFVKDEKTRFSLALEC 656 GnLeiAlelAkeldsedkWkrLGeeALlqGNfqlveeayqrakdfekLsf Gn+eiAle+Ak+ld++++W++LGe+ALlqGN+q+ve++yqr+k+f+kLsf hj01819 657 GNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSF 706 LYlitGdaekLsKlakiAeargdfngaFqnalylGdveervdiLietGrl LYlitG++ekL+K++kiAe+r+d++g++qnalylGdv erv+iL+++G+ hj01819 707 LYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQK 756 PlAyltArThGldseaesiveewkekls<-* +lAyltA+ThGld+eaes++e+++ ++ hj01819 757 SLAYLTAATHGLDEEAESLKETFDP-EK 783 PF06957.2.fs: domain 1 of 1, from 808 to 1225: score 1090.9, E = 0 *->nWPLLrVskGiFEGgLlskggqsAtaraelNveedeaAaldiavvgg nWPLL+VskG+FEG ++skg+++A+a A++di++vg+ hj01819 808 NWPLLTVSKGFFEGTIASKGKGGALA-----------ADIDIDTVGT 843 dDWGDedadalglDesenrDgylegeDglldaeeGEgpeegdEeGGWDvG ++WG eda+ l+lDe Dg++e+ +gl+d+ +G ++++E+GGWDv hj01819 844 EGWG-EDAE-LQLDE----DGFVEATEGLGDDALG---KGQEEGGGWDV- 883 edDLvLPPELDvpkdkagnadsdvfVaPnkGmsvsqiWankSsLaadHva e+DL+LPPELD + ++a a++++fV+P+kG+s++qiW+n+S+L++dH++ hj01819 884 EEDLELPPELDISPGAADGAEDGFFVPPTKGTSPTQIWCNNSQLPVDHIL 933 AGSFeTAmRLLHdQlGVvnFaPfKdLFldlYagSrtsyrAlpglGPsGPv AGSFeTAmRLLHdQ+GV++F+P+K+LFl++Ya++rt+y+Alp+l Ps + hj01819 934 AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCL-PS--M 980 siypeRnwsEsaskNVRgpPAvgfkLsqLakrLqaaYqlTTsGKFeEAve ++yp+Rnw+++++kN g+PAvg+kL++L++rLq++YqlTT+GKFeEAve hj01819 981 YGYPNRNWKDAGLKN--GVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVE 1028 kFrSILlSiPLiVVdskrEvaEakqLItIvrEYvvGLkMElkRKeLpkdt kFrSILlS+PL+VVd+k+E+aEa+qLItI+rEY+vGL E++RK+Lpk+t hj01819 1029 KFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSVETERKKLPKET 1078 leqQKRlcELAAYFTHckLQpvHmiLvLrsAlnlFFKlKNfkTAasFARR leqQKR+cE+AAYFTH++LQpvHmiLvLr+AlnlFFKlKNfkTAa+FARR hj01819 1079 LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARR 1128 LLElaPkpevAqqaRkVlqAcEknptDahqLnYDehNPFvVCgasYvPiY LLEl+PkpevAqq+Rk+l+AcEknptDa qLnYD+hNPF++C+asY+PiY hj01819 1129 LLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIY 1178 RGkpdvkCPYCgAsfsPefeGniCtVCevaeiGkDviGLriSplQsR<-* RGkp++kCP++gA++sPef+G+iC+V++v+eiGkDviGLriSplQ+R hj01819 1179 RGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1225 PF06957.2.ls: domain 1 of 1, from 808 to 1225: score 1092.9, E = 0 *->nWPLLrVskGiFEGgLlskggqsAtaraelNveedeaAaldiavvgg nWPLL+VskG+FEG ++skg+++A+a A++di++vg+ hj01819 808 NWPLLTVSKGFFEGTIASKGKGGALA-----------ADIDIDTVGT 843 dDWGDedadalglDesenrDgylegeDglldaeeGEgpeegdEeGGWDvG ++WG eda+ l+lDe Dg++e+ +gl+d+ +G ++++E+GGWDv hj01819 844 EGWG-EDAE-LQLDE----DGFVEATEGLGDDALG---KGQEEGGGWDV- 883 edDLvLPPELDvpkdkagnadsdvfVaPnkGmsvsqiWankSsLaadHva e+DL+LPPELD + ++a a++++fV+P+kG+s++qiW+n+S+L++dH++ hj01819 884 EEDLELPPELDISPGAADGAEDGFFVPPTKGTSPTQIWCNNSQLPVDHIL 933 AGSFeTAmRLLHdQlGVvnFaPfKdLFldlYagSrtsyrAlpglGPsGPv AGSFeTAmRLLHdQ+GV++F+P+K+LFl++Ya++rt+y+Alp+l Ps + hj01819 934 AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCL-PS--M 980 siypeRnwsEsaskNVRgpPAvgfkLsqLakrLqaaYqlTTsGKFeEAve ++yp+Rnw+++++kN g+PAvg+kL++L++rLq++YqlTT+GKFeEAve hj01819 981 YGYPNRNWKDAGLKN--GVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVE 1028 kFrSILlSiPLiVVdskrEvaEakqLItIvrEYvvGLkMElkRKeLpkdt kFrSILlS+PL+VVd+k+E+aEa+qLItI+rEY+vGL E++RK+Lpk+t hj01819 1029 KFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSVETERKKLPKET 1078 leqQKRlcELAAYFTHckLQpvHmiLvLrsAlnlFFKlKNfkTAasFARR leqQKR+cE+AAYFTH++LQpvHmiLvLr+AlnlFFKlKNfkTAa+FARR hj01819 1079 LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARR 1128 LLElaPkpevAqqaRkVlqAcEknptDahqLnYDehNPFvVCgasYvPiY LLEl+PkpevAqq+Rk+l+AcEknptDa qLnYD+hNPF++C+asY+PiY hj01819 1129 LLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIY 1178 RGkpdvkCPYCgAsfsPefeGniCtVCevaeiGkDviGLriSplQsR<-* RGkp++kCP++gA++sPef+G+iC+V++v+eiGkDviGLriSplQ+R hj01819 1179 RGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1225 //