hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-14400508/chunk_1/iprscan-20080812-14400508.nocrc
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Query sequence: hj01819
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 223.5    1.9e-62   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7       3    38 ..     1    46 []    12.6      4.9
SM00320    2/7      41    80 ..     1    46 []    37.4  1.9e-06
SM00320    3/7      83   122 ..     1    46 []    35.3  8.2e-06
SM00320    4/7     125   164 ..     1    46 []    52.8  4.5e-11
SM00320    5/7     195   234 ..     1    46 []    39.3  5.3e-07
SM00320    6/7     239   278 ..     1    46 []    37.8  1.5e-06
SM00320    7/7     281   319 ..     1    46 []     8.3       24

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 3 to 38: score 12.6, E = 4.9
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +k   +        +V +++f+p         +++++ ++g i lW
     hj01819     3    LtKFETKSA------RVKGLSFHPKR------PWILTSLhNGVIQLW 37   

                   d<-*
                   d   
     hj01819    38 D    38   

SM00320: domain 2 of 7, from 41 to 80: score 37.4, E = 1.9e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        +l+ +++ H+g  pV++++f+          l++sg++D +i++W
     hj01819    41    McTLIDKFDEHDG--PVRGIDFHKQQ------PLFVSGGdDYKIKVW 79   

                   d<-*
                   +   
     hj01819    80 N    80   

SM00320: domain 3 of 7, from 83 to 122: score 35.3, E = 8.2e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +++l+tl gH +  ++++  f++         +++s+s+D tir+W
     hj01819    83    LrRCLFTLLGHLD--YIRTTFFHHEY------PWILSASdDQTIRVW 121  

                   d<-*
                   +   
     hj01819   122 N    122  

SM00320: domain 4 of 7, from 125 to 164: score 52.8, E = 4.5e-11
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++++++l+gH++  +V + +f+p+       +l++s+s D t+r+W
     hj01819   125    SrTCVCVLTGHNH--YVMCAQFHPTE------DLVVSASlDQTVRVW 163  

                   d<-*
                   d   
     hj01819   164 D    164  

SM00320: domain 5 of 7, from 195 to 234: score 39.3, E = 5.3e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  + ++l+gH+   +V+  af+p+        l++sg +D+++++W
     hj01819   195    DaVVKHVLEGHDR--GVNWAAFHPTM------PLIVSGAdDRQVKIW 233  

                   d<-*
                       
     hj01819   234 R    234  

SM00320: domain 6 of 7, from 239 to 278: score 37.8, E = 1.5e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   + t++gH +   V++  f+p        +l++s s+D++ir+W
     hj01819   239    KaWEVDTCRGHYN--NVSCAVFHPRQ------ELILSNSeDKSIRVW 277  

                   d<-*
                   d   
     hj01819   278 D    278  

SM00320: domain 7 of 7, from 281 to 319: score 8.3, E = 24
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ ++t++   +  + + +a +p+         l+++++Dg   ++
     hj01819   281    KrTGVQTFRRDHD--RFWVLAAHPN-------LNLFAAGhDGGMIVF 318  

                   d<-*
                   +   
     hj01819   319 K    319  

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