hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-14520585/chunk_1/iprscan-20080812-14520585.nocrc
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Query sequence: hj01978
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00069.15.fs Protein kinase domain                       251.4    1.7e-72   1
PF00069.15.ls Protein kinase domain                       109.3    1.1e-29   1
PF07714.7.fs Protein tyrosine kinase                      18.9    2.2e-05   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00069.15.fs   1/1       1   157 [.   116   287 .]   251.4  1.7e-72
PF00069.15.ls   1/1       2   157 ..     1   287 []   109.3  1.1e-29
PF07714.7.fs   1/1       8    39 ..   127   158 ..    18.9  2.2e-05

Alignments of top-scoring domains:
PF00069.15.fs: domain 1 of 1, from 1 to 157: score 251.4, E = 1.7e-72
                   *->lQilrgleYLHsngiiHRDLKPeNILldnngvvdaflKiaDFGlAkk
                      + +l+++ +LH+n+i+HRDLKPeNILld+n+++    +++DFG++++
     hj01978     1    RSLLEAVSFLHANNIVHRDLKPENILLDDNMQI----RLSDFGFSCH 43   

                   lst.sss.lttfvGTpwYmAPEvll.....ggngygtkvDvWSlGvilye
                     ++++++l  ++GTp+Y+APE+l+ + +++++gyg++vD W++Gvil+ 
     hj01978    44 --LePGEkLRELCGTPGYLAPEILKcsmdeTHPGYGKEVDLWACGVILFT 91   

                   lltGkpPFsgevqdsldqlqlirkilgpplefdspewdsisrsefrrlpn
                   ll G pPF+++     +q+ ++r+i+++++ f+spewd++s         
     hj01978    92 LLAGSPPFWHR-----RQILMLRMIMEGQYQFSSPEWDDRS--------- 127  

                   lseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                     ++ kdLi+++L++DP+ Rltae++lqHP+f   
     hj01978   128 --STVKDLISRLLQVDPEARLTAEQALQHPFF    157  

PF00069.15.ls: domain 1 of 1, from 2 to 157: score 109.3, E = 1.1e-29
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                                                                     
     hj01978     -    ----------------------------------------------- -    

                   lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse
                                                             +L      
     hj01978     2 ------------------------------------------SLL----- 4    

                   trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv
                                         +++ +LH+n+i+HRDLKPeNILld+n++
     hj01978     5 ----------------------EAVSFLHANNIVHRDLKPENILLDDNMQ 32   

                   vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvll.....ggngy
                   +    +++DFG++++  ++++++l  ++GTp+Y+APE+l+ + +++++gy
     hj01978    33 I----RLSDFGFSCH--LePGEkLRELCGTPGYLAPEILKcsmdeTHPGY 76   

                   gtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdsp
                   g++vD W++Gvil+ ll G pPF+++     +q+ ++r+i+++++ f+sp
     hj01978    77 GKEVDLWACGVILFTLLAGSPPFWHR-----RQILMLRMIMEGQYQFSSP 121  

                   ewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                   ewd++s           ++ kdLi+++L++DP+ Rltae++lqHP+f   
     hj01978   122 EWDDRS-----------STVKDLISRLLQVDPEARLTAEQALQHPFF    157  

PF07714.7.fs: domain 1 of 1, from 8 to 39: score 18.9, E = 2.2e-05
                   *->eYLesknfvHRDLAARNcLVsenlvVKIsDFG<-*
                      ++L+++n+vHRDL   N+L+++n++++ sDFG   
     hj01978     8    SFLHANNIVHRDLKPENILLDDNMQIRLSDFG    39   

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