hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-14520585/chunk_1/iprscan-20080812-14520585.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hj01978
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                  86.0    4.5e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00220    1/1       1   157 [.     1   231 []    86.0  4.5e-21

Alignments of top-scoring domains:
SM00220: domain 1 of 1, from 1 to 157: score 86.0, E = 4.5e-21
                   *->YellkklGkGaFGkVylardkktgrlvAiKvikerilrEikiLkkdH
                                                                     
     hj01978     -    ----------------------------------------------- -    

                   PNIVkLydvfeddklylVmEyceGdlGdLfdllkkrgrrglrkvlsEear
                                                                     
     hj01978     - -------------------------------------------------- -    

                   fyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaDFGlArql...
                      r +l+a+ +LH ++I+HRDLKPeNiLLd++ ++ l+DFG++++l+++
     hj01978     1 ---RSLLEAVSFLHANNIVHRDLKPENILLDDnmQIRLSDFGFSCHLepg 47   

                   ...ttfvGTpeYmAPEvl.........gYgkpavDiWSlGcilyElltGk
                   ++ + ++GTp Y+APE+l+ + +++++gYgk +vD W++G+il+ ll+G 
     hj01978    48 eklRELCGTPGYLAPEILkcsmdethpGYGK-EVDLWACGVILFTLLAGS 96   

                   pPFp..qldlifkkig..............SpeakdLikklLvkdPekRl
                   pPF+++ + l++++i+++ +  ++++++++S+ +kdLi++lL++dPe Rl
     hj01978    97 PPFWhrRQILMLRMIMegqyqfsspewddrSSTVKDLISRLLQVDPEARL 146  

                   ta.eaLedeldikaHPff<-*
                   ta++aL+       HPff   
     hj01978   147 TAeQALQ-------HPFF    157  

//