hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-15043289/chunk_1/iprscan-20080812-15043289.nocrc
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Query sequence: hj02221
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00993.11.ls Class II histocompatibility antigen, alp   163.2      6e-46   1
PF00993.11.fs Class II histocompatibility antigen, alp   161.2    2.4e-45   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00993.11.fs   1/1      39   119 ..     1    84 []   161.2  2.4e-45
PF00993.11.ls   1/1      39   119 ..     1    84 []   163.2    6e-46

Alignments of top-scoring domains:
PF00993.11.fs: domain 1 of 1, from 39 to 119: score 161.2, E = 2.4e-45
                   *->dHvgiyGinfyQssgpsGeythefDGDElFYvDLekKetVwrLPeFa
                      dHv++y ++f+Q+++p Ge+++efD+DE+FYvDL+kKetVw+L eF+
     hj02221    39    DHVSTY-AAFVQTHRPTGEFMFEFDEDEQFYVDLDKKETVWHLEEFG 84   

                   dfasfdgfpQgalaniaicKhNLdvlikrsNsTPatn<-*
                   + +sf+  +Qg+laniai+ +NL++li+rsN+T+a n   
     hj02221    85 RAFSFE--AQGGLANIAILNNNLNTLIQRSNHTQAAN    119  

PF00993.11.ls: domain 1 of 1, from 39 to 119: score 163.2, E = 6e-46
                   *->dHvgiyGinfyQssgpsGeythefDGDElFYvDLekKetVwrLPeFa
                      dHv++y ++f+Q+++p Ge+++efD+DE+FYvDL+kKetVw+L eF+
     hj02221    39    DHVSTY-AAFVQTHRPTGEFMFEFDEDEQFYVDLDKKETVWHLEEFG 84   

                   dfasfdgfpQgalaniaicKhNLdvlikrsNsTPatn<-*
                   + +sf+  +Qg+laniai+ +NL++li+rsN+T+a n   
     hj02221    85 RAFSFE--AQGGLANIAILNNNLNTLIQRSNHTQAAN    119  

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