hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-17095689/chunk_1/iprscan-20090525-17095689.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj02537 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00625.11.fs Guanylate kinase 131.8 1.8e-36 1 PF00625.11.ls Guanylate kinase 130.5 4.2e-36 1 PF02828.7.ls L27 domain 84.9 2.2e-22 2 PF02828.7.fs L27 domain 80.9 3.8e-22 2 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 57.2 2.1e-15 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 59.1 1.3e-14 1 PF07653.7.fs Variant SH3 domain 40.0 7.2e-11 1 PF07653.7.ls Variant SH3 domain 41.8 2.2e-09 1 PF00018.18.fs SH3 domain 27.0 1.3e-06 2 PF00018.18.ls SH3 domain 28.4 2e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02828.7.ls 1/2 17 75 .. 1 56 [] 41.2 3.3e-09 PF02828.7.fs 1/2 17 75 .. 1 56 [] 39.2 2.6e-10 PF02828.7.fs 2/2 79 132 .. 1 56 [] 41.8 4.8e-11 PF02828.7.ls 2/2 79 132 .. 1 56 [] 43.7 5.6e-10 PF00595.14.ls 1/1 146 224 .. 1 86 [] 59.1 1.3e-14 PF00595.14.fs 1/1 146 224 .. 1 86 [] 57.2 2.1e-15 PF00018.18.ls 1/1 238 303 .. 1 59 [] 28.4 2e-05 PF07653.7.ls 1/1 239 303 .. 1 69 [] 41.8 2.2e-09 PF07653.7.fs 1/1 239 303 .. 1 69 [] 40.0 7.2e-11 PF00018.18.fs 2/2 261 303 .. 17 59 .] 21.4 4.7e-05 PF00625.11.fs 1/1 411 503 .. 1 95 [. 131.8 1.8e-36 PF00625.11.ls 1/1 411 511 .. 1 107 [] 130.5 4.2e-36 Alignments of top-scoring domains: PF02828.7.ls: domain 1 of 2, from 17 to 75: score 41.2, E = 3.3e-09 *->avqralelLeeLqsllease...edlaeLrkiLqsphlqsLlevHDk ++++elL L+++l+++++++edl++L +++ +++l+sL+++H+k hj02537 17 SDTGLYELLAALPAQLQPHVdsqEDLTFLWDMFGEKSLHSLVKIHEK 63 vaekvydppspe<-* +++++ ++p+p hj02537 64 LHYYEKQSPVPI 75 PF02828.7.fs: domain 1 of 2, from 17 to 75: score 39.2, E = 2.6e-10 *->avqralelLeeLqsllease...edlaeLrkiLqsphlqsLlevHDk ++++elL L+++l+++++++edl++L +++ +++l+sL+++H+k hj02537 17 SDTGLYELLAALPAQLQPHVdsqEDLTFLWDMFGEKSLHSLVKIHEK 63 vaekvydppspe<-* +++++ ++p+p hj02537 64 LHYYEKQSPVPI 75 PF02828.7.fs: domain 2 of 2, from 79 to 132: score 41.8, E = 4.8e-11 *->avqralelLeeLqslleaseedlaeLrkiLqsphlqsLlevHDkvae a ++a +l eeLq + ++ +eL k+L++p +++Ll vHD+va+ hj02537 79 AAALADDLAEELQNKPLN--SEIRELLKLLSKPNVKALLSVHDTVAQ 123 kvydppspe<-* k+ydp+ p+ hj02537 124 KNYDPVLPP 132 PF02828.7.ls: domain 2 of 2, from 79 to 132: score 43.7, E = 5.6e-10 *->avqralelLeeLqslleaseedlaeLrkiLqsphlqsLlevHDkvae a ++a +l eeLq + ++ +eL k+L++p +++Ll vHD+va+ hj02537 79 AAALADDLAEELQNKPLN--SEIRELLKLLSKPNVKALLSVHDTVAQ 123 kvydppspe<-* k+ydp+ p+ hj02537 124 KNYDPVLPP 132 PF00595.14.ls: domain 1 of 1, from 146 to 224: score 59.1, E = 1.3e-14 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++l k r++lG +ik + g i+v+++++G gaA+++G + hj02537 146 IIRLVK--NREPLGATIKKDEQTG---AIIVARIMRG-GAADRSGLI 186 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD + +vNG ++e+ + ee++++l +s g +t +++ hj02537 187 HVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKII 224 PF00595.14.fs: domain 1 of 1, from 146 to 224: score 57.2, E = 2.1e-15 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++l k r++lG +ik + g i+v+++++G gaA+++G + hj02537 146 IIRLVK--NREPLGATIKKDEQTG---AIIVARIMRG-GAADRSGLI 186 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD + +vNG ++e+ + ee++++l +s g +t +++ hj02537 187 HVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKII 224 PF00018.18.ls: domain 1 of 1, from 238 to 303: score 28.4, E = 2e-05 *->kkvvALYDYeare.......sdELsFkkGDvitvleksddpgWWkgr ++ +AL+DY+++e++ + ++ LsFkkGD++++ +++d+ WW ++ hj02537 238 MFIKALFDYNPNEdkaipckEAGLSFKKGDILQIMSQDDA-TWWQAK 283 lkgtgG.keGliPsNYVepv<-* + +++ GliPs ++ hj02537 284 HEADANpRAGLIPSKHFQER 303 PF07653.7.ls: domain 1 of 1, from 239 to 303: score 41.8, E = 2.2e-09 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww +++a++dy++ + +++ +e+ Ls+kkGd++ + s+dd ww hj02537 239 FIKALFDYNP-NEDKAIPcKEAGLSFKKGDILQIM----SQDDATWW 280 egeslgg....GrrrRGlvPssaveel<-* ++ + + + r+ Gl+Ps++ +e hj02537 281 QAKH--EadanPRA--GLIPSKHFQER 303 PF07653.7.fs: domain 1 of 1, from 239 to 303: score 40.0, E = 7.2e-11 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww +++a++dy++ + +++ +e+ Ls+kkGd++ + s+dd ww hj02537 239 FIKALFDYNP-NEDKAIPcKEAGLSFKKGDILQIM----SQDDATWW 280 egeslgg....GrrrRGlvPssaveel<-* ++ + + + r+ Gl+Ps++ +e hj02537 281 QAKH--EadanPRA--GLIPSKHFQER 303 PF00018.18.fs: domain 2 of 2, from 261 to 303: score 21.4, E = 4.7e-05 *->LsFkkGDvitvleksddpgWWkgrlkgtgG.keGliPsNYVepv<-* LsFkkGD++++ +++d+ WW ++ + +++ GliPs ++ hj02537 261 LSFKKGDILQIMSQDDA-TWWQAKHEADANpRAGLIPSKHFQER 303 PF00625.11.fs: domain 1 of 1, from 411 to 503: score 131.8, E = 1.8e-36 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk TR+ R E dG++Y F+s + +e d ++n+F+Ey+e+ +NyYGTs hj02537 411 TRARRSQESDGVEYIFIS-KHLFETDVQNNKFIEYGEYKNNYYGTSI 456 eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelek<- +Vr v++++k c+LDv p +vk lrt e+ P+++FI+PpS + l + hj02537 457 DSVRSVLAKNKVCLLDVQPHTVKHLRTLEFK-PYVIFIKPPSIERLRE 503 * hj02537 - - PF00625.11.ls: domain 1 of 1, from 411 to 511: score 130.5, E = 4.2e-36 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk TR+ R E dG++Y F+s + +e d ++n+F+Ey+e+ +NyYGTs hj02537 411 TRARRSQESDGVEYIFIS-KHLFETDVQNNKFIEYGEYKNNYYGTSI 456 eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelekrL +Vr v++++k c+LDv p +vk lrt e+ P+++FI+PpS +rL hj02537 457 DSVRSVLAKNKVCLLDVQPHTVKHLRTLEFK-PYVIFIKPPS----IERL 501 rgrnketEEs<-* r +k + + hj02537 502 RETRKNAKII 511 //