hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-17095689/chunk_1/iprscan-20090525-17095689.nocrc
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Query sequence: hj02537
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00072                                                 227.9    8.9e-64   1
SM00569                                                 126.4    3.1e-33   2
SM00228                                                  68.4    8.9e-16   1
SM00326                                                  54.8    1.1e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00569    1/2      17    75 ..     1    62 []    65.7  5.7e-15
SM00569    2/2      79   132 ..     1    62 []    60.7  1.9e-13
SM00228    1/1     154   227 ..     1    80 []    68.4  8.9e-16
SM00326    1/1     238   304 ..     1    58 []    54.8  1.1e-11
SM00072    1/1     374   570 ..     1   203 []   227.9  8.9e-64

Alignments of top-scoring domains:
SM00569: domain 1 of 2, from 17 to 75: score 65.7, E = 5.7e-15
                   *->avqlllevLeeLqsllepkedrqedlqeLrrlLqsmF.sphlqaLlk
                      + ++l+e+L  L+++l+p+    +d+qe + +L++mF++++l++L+k
     hj02537    17    SDTGLYELLAALPAQLQPH----VDSQEDLTFLWDMFgEKSLHSLVK 59   

                   iHDkvaeteydpplpp<-*
                   iH+k++++e+++p+p+   
     hj02537    60 IHEKLHYYEKQSPVPI    75   

SM00569: domain 2 of 2, from 79 to 132: score 60.7, E = 1.9e-13
                   *->avqlllevLeeLqsllepkedrqedlqeLrrlLqsmFsphlqaLlki
                      a+ l+ ++ eeLq+++ +     ++++eL++lL+    p ++aLl++
     hj02537    79    AAALADDLAEELQNKPLN-----SEIRELLKLLSK---PNVKALLSV 117  

                   HDkvaeteydpplpp<-*
                   HD+va+++ydp+lpp   
     hj02537   118 HDTVAQKNYDPVLPP    132  

SM00228: domain 1 of 1, from 154 to 227: score 68.4, E = 8.9e-16
                   *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV
                      ++lG +i+ +++++ i+v+++++G++A+++G     l++vGD++ eV
     hj02537   154    EPLGATIKKdeqtgAIIVARIMRGGAADRSG-----LIHVGDELREV 195  

                   NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   NG ++ve+++ ee++++l +++g      +t+++++g+   
     hj02537   196 NG-IPVEDKRPEEIIQILAQSQG-----AITFKIIPGS    227  

SM00326: domain 1 of 1, from 238 to 304: score 54.8, E = 1.1e-11
                   *->eyvvAlYDyea.......qnedELsFkkGDiitvleksddgWweGel
                      ++ +Al+Dy++++++  ++ e  LsFkkGDi+++ +++d  Ww++++
     hj02537   238    MFIKALFDYNPnedkaipCKEAGLSFKKGDILQIMSQDDATWWQAKH 284  

                   nr..tGkeGlfPsnYVeeie<-*
                     + + + Gl+Ps + +e +   
     hj02537   285 EAdaNPRAGLIPSKHFQERR    304  

SM00072: domain 1 of 1, from 374 to 570: score 227.9, E = 8.9e-64
                   *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE
                      + R++vL Gp GvG   lk kLl  + +  ++g++V+hTTR +R+ E
     hj02537   374    KYRLVVLVGPVGVGLNELKRKLLISDTQ--HYGVTVPHTTRARRSQE 418  

                   vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnlyYGTskesvrqvae
                    +G  v+Y F+s k+ fe+d++++kf+E+gey +n yYGTs++svr v++
     hj02537   419 SDG--VEYIFIS-KHLFETDVQNNKFIEYGEYKNN-YYGTSIDSVRSVLA 464  

                   kGKhclLDidpqgvkqlkkarRkselnpiviFIapPsleeleerlrg...
                   k+K+clLD+ p+ vk l++     e+ p+viFI+pPs+e l+e +++ + 
     hj02537   465 KNKVCLLDVQPHTVKHLRTL----EFKPYVIFIKPPSIERLRETRKNaki 510  

                   .....aeqRgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddled
                    ++++  +  ++ +e+  ++++ +aq  + +y+   hlFd++i+nddl  
     hj02537   511 issrdDQGAAKPFTEEDFQEMIKSAQIMESQYG---HLFDKIIINDDLTV 557  

                   ayYkeLkeileaeq<-*
                   a+  eLk+ +++++   
     hj02537   558 AF-NELKTTFDKLE    570  

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