hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-15095186/chunk_1/iprscan-20080812-15095186.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj02541 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00373.8.fs FERM domain (Band 4.1 family) 232.8 1.4e-72 1 PF00373.8.ls FERM domain (Band 4.1 family) 234.6 2e-67 1 PF00169.19.fs PH domain 136.1 5.8e-41 2 PF00169.19.ls PH domain 140.1 5.6e-39 2 PF08736.1.fs FERM adjacent (FA) 67.8 1.5e-18 1 PF08736.1.ls FERM adjacent (FA) 69.8 7.9e-18 1 PF00621.11.fs RhoGEF domain 42.3 2.8e-12 1 PF00621.11.ls RhoGEF domain 44.1 4.3e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00373.8.fs 1/1 46 234 .. 1 210 [] 232.8 1.4e-72 PF00373.8.ls 1/1 46 234 .. 1 210 [] 234.6 2e-67 PF08736.1.ls 1/1 330 378 .. 1 50 [] 69.8 7.9e-18 PF08736.1.fs 1/1 330 378 .. 1 50 [] 67.8 1.5e-18 PF00621.11.fs 1/1 548 733 .. 1 207 [] 42.3 2.8e-12 PF00621.11.ls 1/1 548 733 .. 1 207 [] 44.1 4.3e-10 PF00169.19.fs 1/2 764 860 .. 1 92 [] 60.9 4.3e-18 PF00169.19.ls 1/2 764 860 .. 1 92 [] 62.9 9.4e-16 PF00169.19.ls 2/2 937 1033 .. 1 92 [] 77.2 4.9e-20 PF00169.19.fs 2/2 937 1033 .. 1 92 [] 75.2 2.1e-22 Alignments of top-scoring domains: PF00373.8.fs: domain 1 of 1, from 46 to 234: score 232.8, E = 1.4e-72 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd +++ lD+t e+F+v + G+vLLd V++hL+l E dYFGL + D hj02541 46 IKIQMLDDTQEAFEVPQRAPGKVLLDAVCNHLNLVEGDYFGLEFPD- 91 DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT k WLd+ K+i kQ +++ ++ +F vKF+p+D +L++e T hj02541 92 ---HKKITVWLDLLKPIVKQ-IRRPKHVVVKFVVKFFPPD-HTQLQEELT 136 rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC rylf LQvkqd+ Grl+C+ +A+LL S VQse GD++e l hj02541 137 RYLFALQVKQDLAQGRLTCNDTSAALLISHIVQSEIGDFDEALDREH--- 183 LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk L+ k +P q d +E+kI e H +H+G++p+e ++ L+ hj02541 184 ---LAKNKYIP-------Q--QDALEDKIVEFHHNHIGQTPAESDFQLLE 221 iArdLemYGVdff<-* iAr+LemYG+ ++ hj02541 222 IARRLEMYGIRLH 234 PF00373.8.ls: domain 1 of 1, from 46 to 234: score 234.6, E = 2e-67 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd +++ lD+t e+F+v + G+vLLd V++hL+l E dYFGL + D hj02541 46 IKIQMLDDTQEAFEVPQRAPGKVLLDAVCNHLNLVEGDYFGLEFPD- 91 DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT k WLd+ K+i kQ +++ ++ +F vKF+p+D +L++e T hj02541 92 ---HKKITVWLDLLKPIVKQ-IRRPKHVVVKFVVKFFPPD-HTQLQEELT 136 rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC rylf LQvkqd+ Grl+C+ +A+LL S VQse GD++e l hj02541 137 RYLFALQVKQDLAQGRLTCNDTSAALLISHIVQSEIGDFDEALDREH--- 183 LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk L+ k +P q d +E+kI e H +H+G++p+e ++ L+ hj02541 184 ---LAKNKYIP-------Q--QDALEDKIVEFHHNHIGQTPAESDFQLLE 221 iArdLemYGVdff<-* iAr+LemYG+ ++ hj02541 222 IARRLEMYGIRLH 234 PF08736.1.ls: domain 1 of 1, from 330 to 378: score 69.8, E = 7.9e-18 *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas p+ +f s+GS+FR+SGRTqkQ++++ +e g+k qFeR++Sk ++ hj02541 330 PKPVLF-SRGSSFRFSGRTQKQVLDYVKEGGHKKVQFERKHSKIHSI 375 rrs<-* r+ hj02541 376 RSL 378 PF08736.1.fs: domain 1 of 1, from 330 to 378: score 67.8, E = 1.5e-18 *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas p+ +f s+GS+FR+SGRTqkQ++++ +e g+k qFeR++Sk ++ hj02541 330 PKPVLF-SRGSSFRFSGRTQKQVLDYVKEGGHKKVQFERKHSKIHSI 375 rrs<-* r+ hj02541 376 RSL 378 PF00621.11.fs: domain 1 of 1, from 548 to 733: score 42.3, E = 2.8e-12 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF ++kE+ +TE++Y++dLe + + +++ ++ + ++ iF hj02541 548 IAKEVSTTERTYLKDLEVITSWFQSTVSKED-----AMPEALKSLIF 589 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N e + +fh+ FLk ++e+r+ ++ + + +qr+Gd+ l+ hj02541 590 PNFEPLHKFHTNFLK-EIEQRLALW---EGRSNAQIRDYQRIGDVMLKN- 634 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd ++ ++ + + A e le +s++ + +f+ + e+ + hj02541 635 IQGMKHLAAHLWKHSEALEALEN--GIKSSRRLENFCRDFELQKVCY--- 679 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda l L ++Ll P+ R+ Y +L L kh p+ ++ + d ++al+ hj02541 680 ----LPLNTFLLRPLHRLMHYNQVLERLCKHHPP--SHADFRDCRAALAE 723 lqdlaksiNe<-* + ++ +++ hj02541 724 ITEMVAQLHG 733 PF00621.11.ls: domain 1 of 1, from 548 to 733: score 44.1, E = 4.3e-10 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF ++kE+ +TE++Y++dLe + + +++ ++ + ++ iF hj02541 548 IAKEVSTTERTYLKDLEVITSWFQSTVSKED-----AMPEALKSLIF 589 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N e + +fh+ FLk ++e+r+ ++ + + +qr+Gd+ l+ hj02541 590 PNFEPLHKFHTNFLK-EIEQRLALW---EGRSNAQIRDYQRIGDVMLKN- 634 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd ++ ++ + + A e le +s++ + +f+ + e+ + hj02541 635 IQGMKHLAAHLWKHSEALEALEN--GIKSSRRLENFCRDFELQKVCY--- 679 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda l L ++Ll P+ R+ Y +L L kh p+ ++ + d ++al+ hj02541 680 ----LPLNTFLLRPLHRLMHYNQVLERLCKHHPP--SHADFRDCRAALAE 723 lqdlaksiNe<-* + ++ +++ hj02541 724 ITEMVAQLHG 733 PF00169.19.fs: domain 1 of 2, from 764 to 860: score 60.9, E = 4.3e-18 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk.....kkpkgsi i+ G L+k + +k+ ++R f+Lf+dvLly + + ++++k g + hj02541 764 FIRLGSLSKLS-GKGLQQRMFFLFNDVLLYTSRGLtasnqFKVHGQL 809 pLsgiqvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsa pL g+++++ +d + ++c+ +r + + +++++a+s e+++Wv++iq+a hj02541 810 PLYGMTIEESEDEwGVPHCLTLRGqRQ-SIIVAASSRSEMEKWVEDIQMA 858 ir<-* i hj02541 859 ID 860 PF00169.19.ls: domain 1 of 2, from 764 to 860: score 62.9, E = 9.4e-16 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk.....kkpkgsi i+ G L+k + +k+ ++R f+Lf+dvLly + + ++++k g + hj02541 764 FIRLGSLSKLS-GKGLQQRMFFLFNDVLLYTSRGLtasnqFKVHGQL 809 pLsgiqvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsa pL g+++++ +d + ++c+ +r + + +++++a+s e+++Wv++iq+a hj02541 810 PLYGMTIEESEDEwGVPHCLTLRGqRQ-SIIVAASSRSEMEKWVEDIQMA 858 ir<-* i hj02541 859 ID 860 PF00169.19.ls: domain 2 of 2, from 937 to 1033: score 77.2, E = 4.9e-20 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs +G Ll+k + +w+k ++v+++ +L++yk+ ++ p s+pL hj02541 937 NQLSGNLLRKFkNSNGWQKLWVVFTNFCLFFYKSHQdNHPLASLPLL 983 giqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkaiqsai g+++t+++++++ ++++F+++++++ +++++aese ++W++ i+sa hj02541 984 GYSLTIPSESeniQKDYVFKLHFkSH-VYYFRAESEYTFERWMEVIRSAT 1032 r<-* + hj02541 1033 S 1033 PF00169.19.fs: domain 2 of 2, from 937 to 1033: score 75.2, E = 2.1e-22 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs +G Ll+k + +w+k ++v+++ +L++yk+ ++ p s+pL hj02541 937 NQLSGNLLRKFkNSNGWQKLWVVFTNFCLFFYKSHQdNHPLASLPLL 983 giqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkaiqsai g+++t+++++++ ++++F+++++++ +++++aese ++W++ i+sa hj02541 984 GYSLTIPSESeniQKDYVFKLHFkSH-VYYFRAESEYTFERWMEVIRSAT 1032 r<-* + hj02541 1033 S 1033 //