hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-15095186/chunk_1/iprscan-20080812-15095186.nocrc
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Query sequence: hj02541
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00295                                                 245.5    4.4e-69   1
SM00325                                                 176.3      3e-48   1
SM00233                                                 150.7    1.5e-40   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00295     1/1      40   234 ..     1   232 []   245.5  4.4e-69
SM00325     1/1     548   733 ..     1   211 []   176.3    3e-48
SM00233     1/2     764   862 ..     1    82 []    70.5    2e-16
SM00233     2/2     937  1035 ..     1    82 []    80.2  2.6e-19

Alignments of top-scoring domains:
SM00295: domain 1 of 1, from 40 to 234: score 245.5, E = 4.4e-69
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      s+k + +k+++ld+t++ fev +++ +++ll++vc++l+l  +e +y
     hj02541    40    SGKLVSIKIQMLDDTQEAFEVPQRAPGKVLLDAVCNHLNL--VEGDY 84   

                   FgLqfedkdedshWldpaktilkqdvkspksepltlyFRvkFyppdwhgp
                   FgL f d+++ + Wld+ k+i kq+++   + + ++ F vkF+ppd    
     hj02541    85 FGLEFPDHKKITVWLDLLKPIVKQIRR---PKHVVVKFVVKFFPPD---- 127  

                   peqlkeDptrynllylQvrddilsGrlpcpseeeallLAaLalqaefGdy
                   + ql+e+ try l+ lQv++d+ +Grl+c+ +  a+lL ++++q+e Gd+
     hj02541   128 HTQLQEELTRY-LFALQVKQDLAQGRLTCN-DTSAALLISHIVQSEIGDF 175  

                   dpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkewrerI
                   d+            +++l  ++++P+q                + ++++I
     hj02541   176 DEA---------LDREHLAKNKYIPQQ----------------DALEDKI 200  

                   velhkehaglspeeaklkYLelarrLpptYGvelF<-*
                   ve+h++h+g++p+e++++ Le+arrL+ +YG++l+   
     hj02541   201 VEFHHNHIGQTPAESDFQLLEIARRLE-MYGIRLH    234  

SM00325: domain 1 of 1, from 548 to 733: score 176.3, E = 3e-48
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      ++kE  +TEr+Y++dL++++ +f+   +ke+       +++  + ++
     hj02541   548    IAKEVSTTERTYLKDLEVITSWFQSTVSKED------AMPEALKSLI 588  

                   FgpNieeiyefHrrFLdeLeerveewl.lskdlKsernsviedsgerigd
                   F+ N+e++++fH++FL+e+e+r+++w+++s       n++i+d ++rigd
     hj02541   589 FP-NFEPLHKFHTNFLKEIEQRLALWEgRS-------NAQIRD-YQRIGD 629  

                   vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies
                   v lk+   + ++++ ++ +++ ++ale l+  +  k++ +++ f++ +e+
     hj02541   630 VMLKN--IQGMKHLAAHLWKH-SEALEALENGI--KSSRRLENFCRDFEL 674  

                   kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk
                   +++c+      l+L ++L+ P+ Rl++Y   L++l+kh pp+h d+ d+ 
     hj02541   675 QKVCY------LPLNTFLLRPLHRLMHYNQVLERLCKHHPPSHADFRDCR 718  

                   kAleaikelasqvNe<-*
                    Al+ i+e+ +q++    
     hj02541   719 AALAEITEMVAQLHG    733  

SM00233: domain 1 of 2, from 764 to 862: score 70.5, E = 2e-16
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk.......kpkgsip
                      +i+ G L+k+s+++ ++r f+Lfn+vLly+    + +++ k  g +p
     hj02541   764    FIRLGSLSKLSGkGLQQRMFFLFNDVLLYTSRGltasnqfKVHGQLP 810  

                   Lsgcsvre.p.......cFeivt.drtlllqAeseeereeWvealqsaia
                   L g++++e++++ + ++c++++ + ++++++A+s +e+e+Wve +q+ai+
     hj02541   811 LYGMTIEEsEdewgvphCLTLRGqRQSIIVAASSRSEMEKWVEDIQMAID 860  

                   ka<-*
                    a   
     hj02541   861 LA    862  

SM00233: domain 2 of 2, from 937 to 1035: score 80.2, E = 2.6e-19
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk...kpkgsipLs
                       +++G Ll+k +++++w+k ++v++n +L++yks++++ p  s+pL 
     hj02541   937    NQLSGNLLRKFknSnGWQKLWVVFTNFCLFFYKSHqdnHPLASLPLL 983  

                   gcsvre.p.........cFeivt.drtlllqAeseeereeWvealqsaia
                   g+s++ + ++++  ++ +F++++++++++++Aese ++e+W+e ++sa++
     hj02541   984 GYSLTIpSeseniqkdyVFKLHFkSHVYYFRAESEYTFERWMEVIRSATS 1033 

                   ka<-*
                   +a   
     hj02541  1034 SA    1035 

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