hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090629/iprscan-20090629-13583089/chunk_1/iprscan-20090629-13583089.nocrc
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Query sequence: hj02546
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00476.11.ls DNA polymerase family A                       821.6   3.8e-244   1
PF00476.11.fs DNA polymerase family A                       819.7   1.5e-243   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00476.11.fs   1/1     752  1204 ..     1   480 []   819.7 1.5e-243
PF00476.11.ls   1/1     752  1204 ..     1   480 []   821.6 3.8e-244

Alignments of top-scoring domains:
PF00476.11.fs: domain 1 of 1, from 752 to 1204: score 819.7, E = 1.5e-243
                   *->vdverleelseelgaqqladlekkiyelaGeeFNlgSpkqlgtvLFe
                      +++++++++++++++++++  ++k+++++G+++N+gSp+++++++++
     hj02546   752    PSYHHGNGPYNDVDIPGCW--FFKLPHKDGNSCNVGSPFAKDFLPKM 796  

                   elGlpklkkTkktGarstnadvLesLreddaheivkiiLeyeylkrqlsk
                   e+G++++++++++G+r++++++++s++++ ah+++++++++   ++++s+
     hj02546   797 EDGTLQAGPGGASGPRALEINKMISFWRN-AHKRISSQMVV---WLPRSA 842  

                   lksTyvdkLplmidpadGriHTsfnqagTaTGRLSstePNLQnIPirnNT
                   l++++++++++++++ +G+i++++++agT+T+R+++++++++++++++  
     hj02546   843 LPRAVIRHPDYDEEGLYGAILPQVVTAGTITRRAVEPTWLTASNARPD-- 890  

                   PTLseyGreIRkaFiAeeGddyvlvaaDYSQiELRilAhLsgdenlieaF
                       ++G+e++++++A++G  y+lv+aD++++EL+i+A+L++++++++++
     hj02546   891 ----RVGSELKAMVQAPPG--YTLVGADVDSQELWIAAVLGDAHFAGMHG 934  

                   reGaDiHtltAadifGvdleeKTAqVtgeqRraAKtiNFGvvYGaSAkgL
                   +++++++tl++++++G+dl++KTA+++g++R++AK++N+G++YGa+++++
     hj02546   935 CTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQPFA 984  

                   sqqLgrfnisIsreEAkefiekYFarfPGLRWYRL.DEGEWLVRELNLPV
                   +++L++fn++++++EA+e++++++a+++GLRWYRL+DEGEWLVRELNLPV
     hj02546   985 ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLsDEGEWLVRELNLPV 1034 

                   DRTEGGWi.LqDLVkayrektvktlveKWEVVAEeakkgGYvetLfgRRR
                   DRTEGGWi+LqDL+k++re+++k++++KWEVVAE+a+kgG+++++f++++
     hj02546  1035 DRTEGGWIsLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLE 1084 

                   SIAesylPdidSrgCgInrsvreaAeRaNeFltSAlNtpIQGsAADilKl
                   SIA+s++P+++++gC+I+r+++++A+++ eF+tS++N+++Q+sA+D+l+l
     hj02546  1085 SIATSDIPRTPVLGCCISRALEPSAVQE-EFMTSRVNWVVQSSAVDYLHL 1133 

                   amIkldeaLreegLraGWDGDFRmllqVHDEivlevpkeekyaeavakli
                   ++++++++++e+++++      R+++++HDE++++v++e++y++a+a++i
     hj02546  1134 MLVAMKWLFEEFAIDG------RFCISIHDEVRYLVREEDRYRAALALQI 1177 

                   kelMenamelwnFYKFLfdVpLlvEvgvGrnWfsa<-*
                   ++l++++m++        ++++l+++++++++fsa   
     hj02546  1178 TNLLTRCMFA--------YKLGLNDLPQSVAFFSA    1204 

PF00476.11.ls: domain 1 of 1, from 752 to 1204: score 821.6, E = 3.8e-244
                   *->vdverleelseelgaqqladlekkiyelaGeeFNlgSpkqlgtvLFe
                      +++++++++++++++++++  ++k+++++G+++N+gSp+++++++++
     hj02546   752    PSYHHGNGPYNDVDIPGCW--FFKLPHKDGNSCNVGSPFAKDFLPKM 796  

                   elGlpklkkTkktGarstnadvLesLreddaheivkiiLeyeylkrqlsk
                   e+G++++++++++G+r++++++++s++++ ah+++++++++   ++++s+
     hj02546   797 EDGTLQAGPGGASGPRALEINKMISFWRN-AHKRISSQMVV---WLPRSA 842  

                   lksTyvdkLplmidpadGriHTsfnqagTaTGRLSstePNLQnIPirnNT
                   l++++++++++++++ +G+i++++++agT+T+R+++++++++++++++  
     hj02546   843 LPRAVIRHPDYDEEGLYGAILPQVVTAGTITRRAVEPTWLTASNARPD-- 890  

                   PTLseyGreIRkaFiAeeGddyvlvaaDYSQiELRilAhLsgdenlieaF
                       ++G+e++++++A++G  y+lv+aD++++EL+i+A+L++++++++++
     hj02546   891 ----RVGSELKAMVQAPPG--YTLVGADVDSQELWIAAVLGDAHFAGMHG 934  

                   reGaDiHtltAadifGvdleeKTAqVtgeqRraAKtiNFGvvYGaSAkgL
                   +++++++tl++++++G+dl++KTA+++g++R++AK++N+G++YGa+++++
     hj02546   935 CTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQPFA 984  

                   sqqLgrfnisIsreEAkefiekYFarfPGLRWYRL.DEGEWLVRELNLPV
                   +++L++fn++++++EA+e++++++a+++GLRWYRL+DEGEWLVRELNLPV
     hj02546   985 ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLsDEGEWLVRELNLPV 1034 

                   DRTEGGWi.LqDLVkayrektvktlveKWEVVAEeakkgGYvetLfgRRR
                   DRTEGGWi+LqDL+k++re+++k++++KWEVVAE+a+kgG+++++f++++
     hj02546  1035 DRTEGGWIsLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLE 1084 

                   SIAesylPdidSrgCgInrsvreaAeRaNeFltSAlNtpIQGsAADilKl
                   SIA+s++P+++++gC+I+r+++++A+++ eF+tS++N+++Q+sA+D+l+l
     hj02546  1085 SIATSDIPRTPVLGCCISRALEPSAVQE-EFMTSRVNWVVQSSAVDYLHL 1133 

                   amIkldeaLreegLraGWDGDFRmllqVHDEivlevpkeekyaeavakli
                   ++++++++++e+++++      R+++++HDE++++v++e++y++a+a++i
     hj02546  1134 MLVAMKWLFEEFAIDG------RFCISIHDEVRYLVREEDRYRAALALQI 1177 

                   kelMenamelwnFYKFLfdVpLlvEvgvGrnWfsa<-*
                   ++l++++m++        ++++l+++++++++fsa   
     hj02546  1178 TNLLTRCMFA--------YKLGLNDLPQSVAFFSA    1204 

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