hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090629/iprscan-20090629-13583089/chunk_1/iprscan-20090629-13583089.nocrc
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Query sequence: hj02546
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00482                                                 393.2   1.5e-113   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00482      1/1     893  1167 ..     1   247 []   393.2 1.5e-113

Alignments of top-scoring domains:
SM00482: domain 1 of 1, from 893 to 1167: score 393.2, E = 1.5e-113
                   *->GreIRraFvAepGyrwvlvsADYSQIELRiLAHLSgDhFk.lHGgtA
                      G+e++++++A+pGy+  lv+AD++++EL+i+A+L+++hF+++HG+tA
     hj02546   893    GSELKAMVQAPPGYT--LVGADVDSQELWIAAVLGDAHFAgMHGCTA 937  

                   lGwenLieaFnnGrDiHtkTAaaiFgVpeeevTpelRraAKaiNFGiiYG
                   +Gw++L++ ++ G+D+H+kT a  +g        ++R +AK++N+G+iYG
     hj02546   938 FGWMTLQGRKSRGTDLHSKT-ATTVG--------ISREHAKIFNYGRIYG 978  

                   mgqkFAfgLaeqlgpsIsraEAEElkelikkYfarfPg............
                   +gq+FA++L++q++++++++EA   +e++++++a+++g +  + +++++ 
     hj02546   979 AGQPFAERLLMQFNHRLTQQEA---AEKAQQMYAATKGlrwyrlsdegew 1025 

                   ............................trvkryikrt.kkveearrkGy
                     ++ + + ++++++  + ++ ++ +++t++k+ +k++++++e+a+++G+
     hj02546  1026 lvrelnlpvdrteggwislqdlrkvqreTARKSQWKKWeVVAERAWKGGT 1075 

                   vtTlfGRRryipdinqSrnpvlragIs.aLe.nl.knnaaaERaAvNapI
                   ++ +f+++++i++++++r+pvl+++Is+aLe+++ +++++++R  vN+++
     hj02546  1076 ESEMFNKLESIATSDIPRTPVLGCCISrALEpSAvQEEFMTSR--VNWVV 1123 

                   QGsAADilKlAmikidkalkekgLraRllLqWVHDElvfEvpeee<-*
                   Q+sA+D+l+l+++++ ++++e+ +++R++++ +HDE++++v+ee+   
     hj02546  1124 QSSAVDYLHLMLVAMKWLFEEFAIDGRFCIS-IHDEVRYLVREED    1167 

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