hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-15392299/chunk_1/iprscan-20090618-15392299.nocrc
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Query sequence: hj02742
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00788.13.ls Ras association (RalGDS/AF-6) domain            70.5    5.1e-18   1
PF00788.13.fs Ras association (RalGDS/AF-6) domain            68.6    1.6e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00788.13.fs   1/1      15    98 ..     1    97 []    68.6  1.6e-17
PF00788.13.ls   1/1      15    98 ..     1    97 []    70.5  5.1e-18

Alignments of top-scoring domains:
PF00788.13.fs: domain 1 of 1, from 15 to 98: score 68.6, E = 1.6e-17
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      +  +l+V+ + ++    +++ vs++tT++eV+ al++  g     ++
     hj02742    15    AAMELKVWVDGIQ---RVVCGVSEQTTCQEVVIALAQAIGQ----TG 54   

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred
                   ++vL     v++ +++er  L+++E+P+ +q+++++ a++  F+Lrr ++
     hj02742    55 RFVL-----VQRLREKER-QLLPQECPVGAQATCGQFASDVQFVLRRTGP 98   

                   <-*
                      
     hj02742     -     -    

PF00788.13.ls: domain 1 of 1, from 15 to 98: score 70.5, E = 5.1e-18
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      +  +l+V+ + ++    +++ vs++tT++eV+ al++  g     ++
     hj02742    15    AAMELKVWVDGIQ---RVVCGVSEQTTCQEVVIALAQAIGQ----TG 54   

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred
                   ++vL     v++ +++er  L+++E+P+ +q+++++ a++  F+Lrr ++
     hj02742    55 RFVL-----VQRLREKER-QLLPQECPVGAQATCGQFASDVQFVLRRTGP 98   

                   <-*
                      
     hj02742     -     -    

//