# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohj02913.fasta.nr -Q hj02913.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hj02913, 135 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842126 sequences Expectation_n fit: rho(ln(x))= 4.3867+/-0.00018; mu= 8.7429+/- 0.010 mean_var=55.2684+/-10.806, 0's: 27 Z-trim: 33 B-trim: 1648 in 1/64 Lambda= 0.172518 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087618|dbj|BAD92256.1| regulator of G-protein ( 135) 914 234.9 2.4e-60 gi|194374737|dbj|BAG62483.1| unnamed protein produ ( 163) 535 140.7 6.8e-32 gi|55728294|emb|CAH90892.1| hypothetical protein [ ( 205) 535 140.8 8e-32 gi|75061719|sp|Q5R747.1|RGS4_PONAB Regulator of G- ( 205) 535 140.8 8e-32 gi|55664921|emb|CAH73768.1| regulator of G-protein ( 187) 534 140.5 8.9e-32 gi|114561049|ref|XP_001174409.1| PREDICTED: simila ( 193) 534 140.5 9.1e-32 gi|1710146|sp|P49798|RGS4_HUMAN Regulator of G-pro ( 205) 534 140.5 9.5e-32 gi|30584351|gb|AAP36424.1| Homo sapiens regulator ( 206) 534 140.5 9.6e-32 gi|86301173|gb|ABC94592.1| regulator of G-protein ( 302) 534 140.6 1.3e-31 gi|109019291|ref|XP_001082467.1| PREDICTED: simila ( 302) 534 140.6 1.3e-31 gi|13096650|pdb|1EZT|A Chain A, High-Resolution So ( 166) 524 137.9 4.6e-31 gi|1710149|sp|P49799|RGS4_RAT Regulator of G-prote ( 205) 524 138.0 5.4e-31 gi|86301151|gb|ABC94590.1| regulator of G-protein ( 205) 523 137.8 6.4e-31 gi|149755768|ref|XP_001492902.1| PREDICTED: simila ( 205) 519 136.8 1.3e-30 gi|118573373|sp|Q0R4E4|RGS4_RABIT Regulator of G-p ( 205) 512 135.0 4.2e-30 gi|148707223|gb|EDL39170.1| regulator of G-protein ( 151) 509 134.2 5.7e-30 gi|13278052|gb|AAH03882.1| Regulator of G-protein ( 205) 509 134.3 7.1e-30 gi|109892996|sp|Q29RM9|RGS4_BOVIN Regulator of G-p ( 205) 508 134.0 8.5e-30 gi|2500167|sp|O08899|RGS4_MOUSE Regulator of G-pro ( 205) 506 133.5 1.2e-29 gi|74006233|ref|XP_545783.2| PREDICTED: similar to ( 205) 467 123.8 1e-26 gi|126306167|ref|XP_001363452.1| PREDICTED: simila ( 209) 446 118.6 3.8e-25 gi|55846736|gb|AAV67372.1| G-protein signaling 4 r ( 142) 437 116.2 1.3e-24 gi|126308060|ref|XP_001368434.1| PREDICTED: simila ( 135) 404 108.0 3.8e-22 gi|82208013|sp|Q7SZC6|RGS4_CHICK Regulator of G-pr ( 208) 351 95.0 5e-18 gi|7804981|gb|AAF70201.1|AF263451_1 RGS4 protein [ ( 204) 339 92.0 3.9e-17 gi|54311514|gb|AAH84886.1| Unknown (protein for MG ( 206) 319 87.0 1.2e-15 gi|39794532|gb|AAH64234.1| Regulator of G-protein ( 205) 310 84.8 5.8e-15 gi|146327769|gb|AAI41787.1| Rgs4 protein [Danio re ( 102) 262 72.6 1.3e-11 gi|37682157|gb|AAQ98005.1| regulator of G-protein ( 215) 262 72.8 2.4e-11 gi|159155989|gb|AAI54781.1| Rgs4 protein [Danio re ( 215) 262 72.8 2.4e-11 gi|126306307|ref|XP_001366477.1| PREDICTED: simila ( 180) 244 68.3 4.6e-10 gi|6093964|sp|P49804|RGS8_RAT Regulator of G-prote ( 180) 238 66.8 1.3e-09 gi|73960429|ref|XP_859033.1| PREDICTED: similar to ( 180) 238 66.8 1.3e-09 gi|51701807|sp|Q8BXT1|RGS8_MOUSE Regulator of G-pr ( 180) 238 66.8 1.3e-09 gi|15021837|dbj|BAB62198.1| hypothetical protein [ ( 196) 238 66.8 1.4e-09 gi|73960431|ref|XP_849550.1| PREDICTED: similar to ( 198) 238 66.8 1.4e-09 gi|149234326|ref|XP_894544.3| PREDICTED: similar t ( 152) 236 66.2 1.6e-09 gi|118094155|ref|XP_001234125.1| PREDICTED: hypoth ( 64) 232 64.9 1.7e-09 gi|73960427|ref|XP_547431.2| PREDICTED: similar to ( 327) 238 67.0 2e-09 gi|126031532|pdb|2ODE|B Chain B, Crystal Structure ( 141) 234 65.7 2.2e-09 gi|149755108|ref|XP_001489600.1| PREDICTED: simila ( 180) 234 65.8 2.6e-09 gi|13124465|sp|P57771|RGS8_HUMAN Regulator of G-pr ( 180) 234 65.8 2.6e-09 gi|149755106|ref|XP_001489619.1| PREDICTED: simila ( 198) 234 65.8 2.8e-09 gi|12017955|gb|AAG45337.1| RGS8 [Homo sapiens] ( 198) 234 65.8 2.8e-09 gi|6002548|gb|AAF00033.1| regulator of G-protein s ( 49) 226 63.3 3.9e-09 gi|114568306|ref|XP_001161343.1| PREDICTED: regula ( 345) 234 66.0 4.2e-09 gi|119390149|pdb|2IHD|A Chain A, Crystal Structure ( 155) 230 64.7 4.6e-09 gi|88930447|sp|Q6RG78|RGS1_HORSE Regulator of G-pr ( 196) 231 65.1 4.6e-09 gi|74006072|ref|XP_849754.1| PREDICTED: similar to ( 222) 231 65.1 5.1e-09 gi|109019046|ref|XP_001112975.1| PREDICTED: simila ( 209) 229 64.6 6.9e-09 >>gi|62087618|dbj|BAD92256.1| regulator of G-protein sig (135 aa) initn: 914 init1: 914 opt: 914 Z-score: 1238.7 bits: 234.9 E(): 2.4e-60 Smith-Waterman score: 914; 100.000% identity (100.000% similar) in 135 aa overlap (1-135:1-135) 10 20 30 40 50 60 hj0291 TFHTLSHVPRRTPMSLLFFASEIQRVHCHLQVTTKHTGLHPQQGYRSNEALAFAPQVNLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TFHTLSHVPRRTPMSLLFFASEIQRVHCHLQVTTKHTGLHPQQGYRSNEALAFAPQVNLD 10 20 30 40 50 60 70 80 90 100 110 120 hj0291 SCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKG 70 80 90 100 110 120 130 hj0291 AKSSADCASLVPQCA ::::::::::::::: gi|620 AKSSADCASLVPQCA 130 >>gi|194374737|dbj|BAG62483.1| unnamed protein product [ (163 aa) initn: 532 init1: 532 opt: 535 Z-score: 727.8 bits: 140.7 E(): 6.8e-32 Smith-Waterman score: 535; 74.783% identity (84.348% similar) in 115 aa overlap (24-135:49-163) 10 20 30 40 50 hj0291 TFHTLSHVPRRTPMSLLFFASEIQRV-HCHLQVTTKHTGLHPQQGYRSNEALA ::: . ... . . : :. :: .. gi|194 MKHRLGFLLQKSDSCEHNSSHNKKDKVVICQRVSQEEVKKIKSPSKLSPKAKKIYNEFIS 20 30 40 50 60 70 60 70 80 90 100 110 hj0291 F--APQVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNP . .:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNP 80 90 100 110 120 130 120 130 hj0291 SSCGAEKQKGAKSSADCASLVPQCA ::::::::::::::::::::::::: gi|194 SSCGAEKQKGAKSSADCASLVPQCA 140 150 160 >>gi|55728294|emb|CAH90892.1| hypothetical protein [Pong (205 aa) initn: 532 init1: 532 opt: 535 Z-score: 726.5 bits: 140.8 E(): 8e-32 Smith-Waterman score: 535; 83.838% identity (88.889% similar) in 99 aa overlap (39-135:107-205) 10 20 30 40 50 60 hj0291 PRRTPMSLLFFASEIQRVHCHLQVTTKHTGLHPQQGYRSNEALAF--APQVNLDSCTREE : :. :: .. . .:::::::::: gi|557 KAFLKSEYSEGNIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQASKEVNLDSCTREE 80 90 100 110 120 130 70 80 90 100 110 120 hj0291 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD 140 150 160 170 180 190 130 hj0291 CASLVPQCA ::::::::: gi|557 CASLVPQCA 200 >>gi|75061719|sp|Q5R747.1|RGS4_PONAB Regulator of G-prot (205 aa) initn: 532 init1: 532 opt: 535 Z-score: 726.5 bits: 140.8 E(): 8e-32 Smith-Waterman score: 535; 83.838% identity (88.889% similar) in 99 aa overlap (39-135:107-205) 10 20 30 40 50 60 hj0291 PRRTPMSLLFFASEIQRVHCHLQVTTKHTGLHPQQGYRSNEALAF--APQVNLDSCTREE : :. :: .. . .:::::::::: gi|750 KAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQASKEVNLDSCTREE 80 90 100 110 120 130 70 80 90 100 110 120 hj0291 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD 140 150 160 170 180 190 130 hj0291 CASLVPQCA ::::::::: gi|750 CASLVPQCA 200 >>gi|55664921|emb|CAH73768.1| regulator of G-protein sig (187 aa) initn: 532 init1: 532 opt: 534 Z-score: 725.7 bits: 140.5 E(): 8.9e-32 Smith-Waterman score: 534; 83.838% identity (88.889% similar) in 99 aa overlap (39-135:89-187) 10 20 30 40 50 60 hj0291 PRRTPMSLLFFASEIQRVHCHLQVTTKHTGLHPQQGYRSNEALAF--APQVNLDSCTREE : :. :: .. . .:::::::::: gi|556 KAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREE 60 70 80 90 100 110 70 80 90 100 110 120 hj0291 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD 120 130 140 150 160 170 130 hj0291 CASLVPQCA ::::::::: gi|556 CASLVPQCA 180 >>gi|114561049|ref|XP_001174409.1| PREDICTED: similar to (193 aa) initn: 532 init1: 532 opt: 534 Z-score: 725.5 bits: 140.5 E(): 9.1e-32 Smith-Waterman score: 534; 83.838% identity (88.889% similar) in 99 aa overlap (39-135:95-193) 10 20 30 40 50 60 hj0291 PRRTPMSLLFFASEIQRVHCHLQVTTKHTGLHPQQGYRSNEALAF--APQVNLDSCTREE : :. :: .. . .:::::::::: gi|114 KAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREE 70 80 90 100 110 120 70 80 90 100 110 120 hj0291 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD 130 140 150 160 170 180 130 hj0291 CASLVPQCA ::::::::: gi|114 CASLVPQCA 190 >>gi|1710146|sp|P49798|RGS4_HUMAN Regulator of G-protein (205 aa) initn: 532 init1: 532 opt: 534 Z-score: 725.1 bits: 140.5 E(): 9.5e-32 Smith-Waterman score: 534; 83.838% identity (88.889% similar) in 99 aa overlap (39-135:107-205) 10 20 30 40 50 60 hj0291 PRRTPMSLLFFASEIQRVHCHLQVTTKHTGLHPQQGYRSNEALAF--APQVNLDSCTREE : :. :: .. . .:::::::::: gi|171 KAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREE 80 90 100 110 120 130 70 80 90 100 110 120 hj0291 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|171 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD 140 150 160 170 180 190 130 hj0291 CASLVPQCA ::::::::: gi|171 CASLVPQCA 200 >>gi|30584351|gb|AAP36424.1| Homo sapiens regulator of G (206 aa) initn: 532 init1: 532 opt: 534 Z-score: 725.1 bits: 140.5 E(): 9.6e-32 Smith-Waterman score: 534; 83.838% identity (88.889% similar) in 99 aa overlap (39-135:107-205) 10 20 30 40 50 60 hj0291 PRRTPMSLLFFASEIQRVHCHLQVTTKHTGLHPQQGYRSNEALAF--APQVNLDSCTREE : :. :: .. . .:::::::::: gi|305 KAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREE 80 90 100 110 120 130 70 80 90 100 110 120 hj0291 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD 140 150 160 170 180 190 130 hj0291 CASLVPQCA ::::::::: gi|305 CASLVPQCAL 200 >>gi|86301173|gb|ABC94592.1| regulator of G-protein sign (302 aa) initn: 532 init1: 532 opt: 534 Z-score: 722.8 bits: 140.6 E(): 1.3e-31 Smith-Waterman score: 534; 83.838% identity (88.889% similar) in 99 aa overlap (39-135:204-302) 10 20 30 40 50 60 hj0291 PRRTPMSLLFFASEIQRVHCHLQVTTKHTGLHPQQGYRSNEALAF--APQVNLDSCTREE : :. :: .. . .:::::::::: gi|863 KAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREE 180 190 200 210 220 230 70 80 90 100 110 120 hj0291 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|863 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD 240 250 260 270 280 290 130 hj0291 CASLVPQCA ::::::::: gi|863 CASLVPQCA 300 >>gi|109019291|ref|XP_001082467.1| PREDICTED: similar to (302 aa) initn: 532 init1: 532 opt: 534 Z-score: 722.8 bits: 140.6 E(): 1.3e-31 Smith-Waterman score: 534; 83.838% identity (88.889% similar) in 99 aa overlap (39-135:204-302) 10 20 30 40 50 60 hj0291 PRRTPMSLLFFASEIQRVHCHLQVTTKHTGLHPQQGYRSNEALAF--APQVNLDSCTREE : :. :: .. . .:::::::::: gi|109 KAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREE 180 190 200 210 220 230 70 80 90 100 110 120 hj0291 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVNPSSCGAEKQKGAKSSAD 240 250 260 270 280 290 130 hj0291 CASLVPQCA ::::::::: gi|109 CASLVPQCA 300 135 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 15:25:56 2008 done: Tue Aug 12 15:28:56 2008 Total Scan time: 538.610 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]