hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-15285664/chunk_1/iprscan-20080812-15285664.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hj02913
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00615.9.fs Regulator of G protein signaling domain         84.6    1.9e-22   1
PF00615.9.ls Regulator of G protein signaling domain         38.0    3.1e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00615.9.ls   1/1       4   108 ..     1   143 []    38.0  3.1e-08
PF00615.9.fs   1/1      55   108 ..    78   143 .]    84.6  1.9e-22

Alignments of top-scoring domains:
PF00615.9.ls: domain 1 of 1, from 4 to 108: score 38.0, E = 3.1e-08
                   *->sfeklldkqpiGrllFreFLktefsepkenieFwlaveEyektespa
                      ++ ++  + p  +l F    +   ++             + +t  + 
     hj02913     4    TLSHVPRRTPMSLLFFASEIQRVHCH-------------LQVTTKH- 36   

                   ekrpdkaredevlAaAyGIydeFispeapk..fevnldsevvestqqnlk
                     ++ + ++             + s ea++  ++vnlds+++e+t  n++
     hj02913    37 --TGLHPQQ------------GYRSNEALAfaPQVNLDSCTREETSRNML 72   

                   eavevddllkdlqptkdlFeeaqreiytlmrgDsfprFLeSdyflrfL<-
                   e            pt ++F+eaq++i++lm++Ds++rFL+S+++l+++  
     hj02913    73 E------------PTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLV   108  

                   *
                    
     hj02913     -   -    

PF00615.9.fs: domain 1 of 1, from 55 to 108: score 84.6, E = 1.9e-22
                   *->fevnldsevvestqqnlkeavevddllkdlqptkdlFeeaqreiytl
                      ++vnlds+++e+t  n++e            pt ++F+eaq++i++l
     hj02913    55    PQVNLDSCTREETSRNMLE------------PTITCFDEAQKKIFNL 89   

                   mrgDsfprFLeSdyflrfL<-*
                   m++Ds++rFL+S+++l+++   
     hj02913    90 MEKDSYRRFLKSRFYLDLV    108  

//