hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-15344994/chunk_1/iprscan-20080812-15344994.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hj02958
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00105.9.fs  Zinc finger, C4 type (two domains)        177.3    1.5e-52   1
PF00105.9.ls  Zinc finger, C4 type (two domains)        179.3    8.9e-51   1
PF00104.20.fs Ligand-binding domain of nuclear hormon   152.9      2e-45   1
PF00104.20.ls Ligand-binding domain of nuclear hormon   146.0    9.4e-41   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00105.9.fs    1/1     141   217 ..     1    77 []   177.3  1.5e-52
PF00105.9.ls    1/1     141   217 ..     1    77 []   179.3  8.9e-51
PF00104.20.fs   1/1     450   618 ..     1   178 [.   152.9    2e-45
PF00104.20.ls   1/1     450   618 ..     1   198 []   146.0  9.4e-41

Alignments of top-scoring domains:
PF00105.9.fs: domain 1 of 1, from 141 to 217: score 177.3, E = 1.5e-52
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv
                       lCkVCGD ASG+HYGv++CEGCKGFFrRSiq+n+++  C++n +C 
     hj02958   141    LLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCS 187  

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   I + nRnrCQ CR+kKCL+VGMs++aVrfg   
     hj02958   188 IMRMNRNRCQQCRFKKCLSVGMSRDAVRFG    217  

PF00105.9.ls: domain 1 of 1, from 141 to 217: score 179.3, E = 8.9e-51
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv
                       lCkVCGD ASG+HYGv++CEGCKGFFrRSiq+n+++  C++n +C 
     hj02958   141    LLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCS 187  

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   I + nRnrCQ CR+kKCL+VGMs++aVrfg   
     hj02958   188 IMRMNRNRCQQCRFKKCLSVGMSRDAVRFG    217  

PF00104.20.fs: domain 1 of 1, from 450 to 618: score 152.9, E = 2e-45
                   *->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk
                      + ++  +ve+aK++PgF++Ls++DQ+ LLk++ +e+l+ r+a  ++ 
     hj02958   450    TPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDA 496  

                   ek.elllfpdggdifeeqlr.ggl.elvrilqelv.plreLkldeeEyal
                   ++++++++ +  +   + l+++g ++l   ++e++++l++L+l++eE++l
     hj02958   497 KErTVTFLSGKKYS-VDDLHsMGAgDLLNSMFEFSeKLNALQLSDEEMSL 545  

                   LkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspqd
                   + A vL + d++g   ++ + ve lqe +++aL+  +++++   p+   +
     hj02958   546 FTAVVLVSADRSG--IENVNSVEALQETLIRALRTLIMKNH---PN---E 587  

                   prgpsRFakLLllLpelrslsksklieflfflklf<-*
                      +  F+kLLl+Lp lrsl+ + ++e+l+ +k++   
     hj02958   588 A--S-IFTKLLLKLPDLRSLN-NMHSEELLAFKVH    618  

PF00104.20.ls: domain 1 of 1, from 450 to 618: score 146.0, E = 9.4e-41
                   *->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk
                      + ++  +ve+aK++PgF++Ls++DQ+ LLk++ +e+l+ r+a  ++ 
     hj02958   450    TPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDA 496  

                   ek.elllfpdggdifeeqlr.ggl.elvrilqelv.plreLkldeeEyal
                   ++++++++ +  +   + l+++g ++l   ++e++++l++L+l++eE++l
     hj02958   497 KErTVTFLSGKKYS-VDDLHsMGAgDLLNSMFEFSeKLNALQLSDEEMSL 545  

                   LkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspqd
                   + A vL + d++g   ++ + ve lqe +++aL+  +++++   p+   +
     hj02958   546 FTAVVLVSADRSG--IENVNSVEALQETLIRALRTLIMKNH---PN---E 587  

                   prgpsRFakLLllLpelrslsksklieflfflklfgpvlfpiklppLldv
                      +  F+kLLl+Lp lrsl+ + ++e+l+ +k+                
     hj02958   588 A--S-IFTKLLLKLPDLRSLN-NMHSEELLAFKV---------------- 617  

                   LfkEi<-*
                           
     hj02958   618 ----H    618  

//