hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-15344994/chunk_1/iprscan-20080812-15344994.nocrc
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Query sequence: hj02958
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00430                                                 145.7    4.7e-39   1
SM00399                                                 142.4    4.7e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00399    1/1     140   212 ..     1    72 []   142.4  4.7e-38
SM00430    1/1     447   605 ..     1   158 []   145.7  4.7e-39

Alignments of top-scoring domains:
SM00399: domain 1 of 1, from 140 to 212: score 142.4, E = 4.7e-38
                   *->sepCaVCgdpAsGyHfGvlsCrACkaFFRRtvvlkkkYk.CkknnnC
                        +C+VCgd AsG+H+Gv++C++Ck+FFRR+++ +++Yk+C kn nC
     hj02958   140    VLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKkCLKNENC 186  

                   eidkkgRnrCRaCRlkKClevGMnpe<-*
                    i   +RnrC+ CR+kKCl vGM ++   
     hj02958   187 SIMRMNRNRCQQCRFKKCLSVGMSRD    212  

SM00430: domain 1 of 1, from 447 to 605: score 145.7, E = 4.7e-39
                   *->ewwerdllltvewaksfpfFreLsleDqiiLLksfwfelllLesayr
                      ++++ +++ +ve+ak++p+Fr+Ls++Dq+ LLk++ fe+l+++ a  
     hj02958   447    MSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASL 493  

                   sa.lkksdlllfpdgtyirpd...lf.pfldrildelv.plreLkltdeE
                   ++   +  + ++++ +y+ +d ++++ ++l   ++e++++l  L+l+deE
     hj02958   494 FDaKER-TVTFLSGKKYSVDDlhsMGaGDLLNSMFEFSeKLNALQLSDEE 542  

                   yalLkaillfnpagpglseegqeiveklqeklsnaLhdYylknypmpnyp
                   ++l+ a +l + ++ g+++  +  ve+lqe l++aL+  ++kn+p  n +
     hj02958   543 MSLFTAVVLVSADRSGIEN--VNSVEALQETLIRALRTLIMKNHP--NEA 588  

                   sRfakLllllpslrkis<-*
                   s f+kLll+lp+lr+++   
     hj02958   589 SIFTKLLLKLPDLRSLN    605  

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