hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-15403175/chunk_1/iprscan-20080812-15403175.nocrc
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Query sequence: hj03059
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00029.9.fs Connexin                                       320.2    3.4e-93   1
PF00029.9.ls Connexin                                       229.1    8.9e-66   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00029.9.fs   1/1      11   146 ..     1   150 [.   320.2  3.4e-93
PF00029.9.ls   1/1      11   194 ..     1   244 []   229.1  8.9e-66

Alignments of top-scoring domains:
PF00029.9.fs: domain 1 of 1, from 11 to 146: score 320.2, E = 3.4e-93
                   *->dWsfLgrLLegVnkHSTviGKvWLtVLFIFRILvLgvAAEsVWgDEQ
                      dWs+Lg+LL++V+ +ST++GKvWL+VLFIFRIL+Lg+A+Es+WgDEQ
     hj03059    11    DWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQ 57   

                   sdFvCNTqQPGCeNVCYDqaFPISHvRlWvLQlIFVSTPsLlylgHVaYr
                   s+F+CNTqQPGCeNVCYD+ FPISHvR+WvLQ+IFVS+P+Llyl+HV+Y+
     hj03059    58 SAFRCNTQQPGCENVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYV 107  

                   vrkeeKrkekeeelrrlrakdlsveeakkqgleeedkledpplvaekqkl
                   +rkeeK+++keeel++ ++++ +v++++kq              +e++k+
     hj03059   108 MRKEEKLNKKEEELKVAQTDGVNVDMHLKQ--------------IEIKKF 143  

                   kik<-*
                   k++   
     hj03059   144 KYS    146  

PF00029.9.ls: domain 1 of 1, from 11 to 194: score 229.1, E = 8.9e-66
                   *->dWsfLgrLLegVnkHSTviGKvWLtVLFIFRILvLgvAAEsVWgDEQ
                      dWs+Lg+LL++V+ +ST++GKvWL+VLFIFRIL+Lg+A+Es+WgDEQ
     hj03059    11    DWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQ 57   

                   sdFvCNTqQPGCeNVCYDqaFPISHvRlWvLQlIFVSTPsLlylgHVaYr
                   s+F+CNTqQPGCeNVCYD+ FPISHvR+WvLQ+IFVS+P+Llyl+HV+Y+
     hj03059    58 SAFRCNTQQPGCENVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYV 107  

                   vrkeeKrkekeeelrrlrakdlsveeakkqgleeedkledpplvaekqkl
                   +rkeeK+++keeel++ ++++ +v++++kq              +e++k+
     hj03059   108 MRKEEKLNKKEEELKVAQTDGVNVDMHLKQ--------------IEIKKF 143  

                   kikdedGkvrirGgLlwTYvlsilfKtifEvgFLygqYlLYpGFtlsply
                   k++            l+T                        +  +s ++
     hj03059   144 KYS------------LRT------------------------DMHISGVF 157  

                   kCerayPCPhtVDCFvSRPTEKTIFiiFMLvVsaisLlLNlaElvhL<-*
                     ++a          v+      + i    +++  s    l+E   L   
     hj03059   158 ATKDA----------VAVWNGRQVAIFELSGAAIRSAGTFLCETPVL    194  

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