hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-17164345/chunk_1/iprscan-20090525-17164345.nocrc
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Query sequence: hj03610
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF03223.5.ls V-ATPase subunit C                           605.2   5.4e-179   1
PF03223.5.fs V-ATPase subunit C                           602.9   2.7e-178   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF03223.5.ls   1/1      10   385 ..     1   384 []   605.2 5.4e-179
PF03223.5.fs   1/1      11   385 ..     1   384 []   602.9 2.7e-178

Alignments of top-scoring domains:
PF03223.5.ls: domain 1 of 1, from 10 to 385: score 605.2, E = 5.4e-179
                   *->tqeYWliSlPvedgnvAdGktdlWdrLnektskhsfdspnykFniPd
                       +e+WliS+P+e+          W++L  +tsk +++   +kFniPd
     hj03610    10    MTEFWLISAPGEKT--CQ---QTWEKLHAATSKNNNLAVTSKFNIPD 51   

                   LRVGTLDsLlaLsDDLsKsdtfvEgVskKirrqivElLErkkGkeaesLt
                   L+VGTLD L++LsD+L K+d fvEgV kK+++++ ++LE  k k  e+L 
     hj03610    52 LKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLL 101  

                   idGvpvdsYLtrFvWDeAKYPlklsLkeivekIqsqVskIdDDLKVksae
                    +Gv+  +Y+trF+WD AKYP+k+sLk i+e+I + V +Id+DLK + + 
     hj03610   102 ANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASA 151  

                   YnnlksqLasinRKqsGsLaVRdLsdLvkadDfiVeSEyLvTllvVVPKy
                   Ynnlk+ L   +RK  GsL++R L++ vk dDf++ SEyLvTllvVVPK 
     hj03610   152 YNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKL 201  

                   SqKeWlacYeTLsdfVVPRSSKkLaeDNEYaLYTVtLFkKviDnFKvkar
                      +W   YeTL  +VVPRSS  L eD +  L  VtLF K +D+F+ kar
     hj03610   202 NHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKAR 251  

                   EkkFvVRDFeyseeaqearkqErdKLlqDkerlrtSPLirWcklnfgevF
                   E+kF+VRDF+y ee  +a k E   L  Dk+++  + L+rW+k+nf e+F
     hj03610   252 ENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGP-LVRWLKVNFSEAF 300  

                   saWvHlkaVRVFVESvLRYGlPvnFqAcviePakgadKKvRdiLfklyky
                    aW+H ka+RVFVESvLRYGlPvnFqA +++P k+  KK+R++L++lyk+
     hj03610   301 IAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKH 350  

                   ldStaa.lIskkeEdesdalgsaGvnefyPYvsfklNi<-*
                   ldS+aa  I+     + + l  +   e+yPYv  k++    
     hj03610   351 LDSSAAaIIDAPM--DIPGLN-LSQQEYYPYVYYKIDC    385  

PF03223.5.fs: domain 1 of 1, from 11 to 385: score 602.9, E = 2.7e-178
                   *->tqeYWliSlPvedgnvAdGktdlWdrLnektskhsfdspnykFniPd
                       +e+WliS+P+e+          W++L  +tsk +++   +kFniPd
     hj03610    11    -TEFWLISAPGEKT--CQ---QTWEKLHAATSKNNNLAVTSKFNIPD 51   

                   LRVGTLDsLlaLsDDLsKsdtfvEgVskKirrqivElLErkkGkeaesLt
                   L+VGTLD L++LsD+L K+d fvEgV kK+++++ ++LE  k k  e+L 
     hj03610    52 LKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLL 101  

                   idGvpvdsYLtrFvWDeAKYPlklsLkeivekIqsqVskIdDDLKVksae
                    +Gv+  +Y+trF+WD AKYP+k+sLk i+e+I + V +Id+DLK + + 
     hj03610   102 ANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASA 151  

                   YnnlksqLasinRKqsGsLaVRdLsdLvkadDfiVeSEyLvTllvVVPKy
                   Ynnlk+ L   +RK  GsL++R L++ vk dDf++ SEyLvTllvVVPK 
     hj03610   152 YNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKL 201  

                   SqKeWlacYeTLsdfVVPRSSKkLaeDNEYaLYTVtLFkKviDnFKvkar
                      +W   YeTL  +VVPRSS  L eD +  L  VtLF K +D+F+ kar
     hj03610   202 NHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKAR 251  

                   EkkFvVRDFeyseeaqearkqErdKLlqDkerlrtSPLirWcklnfgevF
                   E+kF+VRDF+y ee  +a k E   L  Dk+++  + L+rW+k+nf e+F
     hj03610   252 ENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGP-LVRWLKVNFSEAF 300  

                   saWvHlkaVRVFVESvLRYGlPvnFqAcviePakgadKKvRdiLfklyky
                    aW+H ka+RVFVESvLRYGlPvnFqA +++P k+  KK+R++L++lyk+
     hj03610   301 IAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKH 350  

                   ldStaa.lIskkeEdesdalgsaGvnefyPYvsfklNi<-*
                   ldS+aa  I+     + + l  +   e+yPYv  k++    
     hj03610   351 LDSSAAaIIDAPM--DIPGLN-LSQQEYYPYVYYKIDC    385  

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