hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090416/iprscan-20090416-16505766/chunk_1/iprscan-20090416-16505766.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hj03737 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01535.11.fs PPR repeat 136.2 4.2e-39 10 PF01535.11.ls PPR repeat 135.9 1e-37 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01535.11.fs 1/10 165 199 .. 1 35 [] 11.9 0.014 PF01535.11.ls 1/9 165 199 .. 1 35 [] 13.9 0.16 PF01535.11.ls 2/9 200 234 .. 1 35 [] 24.5 0.00035 PF01535.11.fs 2/10 200 234 .. 1 35 [] 22.5 1.1e-05 PF01535.11.ls 3/9 235 269 .. 1 35 [] 27.8 3.6e-05 PF01535.11.fs 3/10 235 269 .. 1 35 [] 25.8 1.2e-06 PF01535.11.ls 4/9 270 304 .. 1 35 [] 15.5 0.1 PF01535.11.fs 4/10 270 304 .. 1 35 [] 13.5 0.0048 PF01535.11.ls 5/9 442 476 .. 1 35 [] 2.1 3.9 PF01535.11.ls 6/9 714 748 .. 1 35 [] 7.5 0.9 PF01535.11.fs 6/10 716 738 .. 3 25 .. 8.5 0.15 PF01535.11.ls 7/9 751 785 .. 1 35 [] 12.3 0.24 PF01535.11.fs 7/10 756 785 .. 6 35 .] 16.5 0.00064 PF01535.11.fs 8/10 958 992 .. 1 35 [] 10.0 0.052 PF01535.11.ls 8/9 958 992 .. 1 35 [] 12.0 0.26 PF01535.11.ls 9/9 1321 1355 .. 1 35 [] 20.4 0.006 PF01535.11.fs 10/10 1321 1355 .. 1 35 [] 18.4 0.00018 Alignments of top-scoring domains: PF01535.11.fs: domain 1 of 10, from 165 to 199: score 11.9, E = 0.014 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* + Yn+l++ y +n +++ +M+e +i P+ hj03737 165 SHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNR 199 PF01535.11.ls: domain 1 of 9, from 165 to 199: score 13.9, E = 0.16 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* + Yn+l++ y +n +++ +M+e +i P+ hj03737 165 SHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNR 199 PF01535.11.ls: domain 2 of 9, from 200 to 234: score 24.5, E = 0.00035 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* vtY lI +yc G++e A +++ Mk k++ ++ hj03737 200 VTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTE 234 PF01535.11.fs: domain 2 of 10, from 200 to 234: score 22.5, E = 1.1e-05 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* vtY lI +yc G++e A +++ Mk k++ ++ hj03737 200 VTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTE 234 PF01535.11.ls: domain 3 of 9, from 235 to 269: score 27.8, E = 3.6e-05 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* +++l+ g++++G++e A+ ++ M++ Gi+P hj03737 235 AVFSALVTGHARAGDMENAENILTVMRDAGIEPGP 269 PF01535.11.fs: domain 3 of 10, from 235 to 269: score 25.8, E = 1.2e-06 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* +++l+ g++++G++e A+ ++ M++ Gi+P hj03737 235 AVFSALVTGHARAGDMENAENILTVMRDAGIEPGP 269 PF01535.11.ls: domain 4 of 9, from 270 to 304: score 15.5, E = 0.1 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* tY +l+++y+ +G+++ + + +e+ +++ ++ + hj03737 270 DTYLALLNAYAEKGDIDHVKQTLEKVEKSELHLMD 304 PF01535.11.fs: domain 4 of 10, from 270 to 304: score 13.5, E = 0.0048 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* tY +l+++y+ +G+++ + + +e+ +++ ++ + hj03737 270 DTYLALLNAYAEKGDIDHVKQTLEKVEKSELHLMD 304 PF01535.11.ls: domain 5 of 9, from 442 to 476: score 2.1, E = 3.9 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* + l+ g k+++++ +e+++ M+e G++Pd hj03737 442 HYFWPLLVGRRKEKNVQGIIEILKGMQELGVHPDQ 476 PF01535.11.ls: domain 6 of 9, from 714 to 748: score 7.5, E = 0.9 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* Y +lI+ +c++ k+e+Al l ee + + + hj03737 714 GGYAALINLCCRHDKVEDALNLKEEFDRLDSSAVL 748 PF01535.11.fs: domain 6 of 10, from 716 to 738: score 8.5, E = 0.15 *->YntlIsgycknGkleeAlelfee<-* Y +lI+ +c++ k+e+Al l ee hj03737 716 YAALINLCCRHDKVEDALNLKEE 738 PF01535.11.ls: domain 7 of 9, from 751 to 785: score 12.3, E = 0.24 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* Y l++ ++k+Gkl++A+ +++eMkek++ + hj03737 751 GKYVGLVRVLAKHGKLQDAINILKEMKEKDVLIKD 785 PF01535.11.fs: domain 7 of 10, from 756 to 785: score 16.5, E = 0.00064 *->lIsgycknGkleeAlelfeeMkekGikPdv<-* l++ ++k+Gkl++A+ +++eMkek++ + hj03737 756 LVRVLAKHGKLQDAINILKEMKEKDVLIKD 785 PF01535.11.fs: domain 8 of 10, from 958 to 992: score 10.0, E = 0.052 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* +Y l++ y nG+++ A ++++++e+++ P + hj03737 958 QMYYNLLKLYKINGDWQRADAVWNKIQEENVIPRE 992 PF01535.11.ls: domain 8 of 9, from 958 to 992: score 12.0, E = 0.26 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* +Y l++ y nG+++ A ++++++e+++ P + hj03737 958 QMYYNLLKLYKINGDWQRADAVWNKIQEENVIPRE 992 PF01535.11.ls: domain 9 of 9, from 1321 to 1355: score 20.4, E = 0.006 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* +Yn+l+++y+ ++++ A l+e + k+ k d+ hj03737 1321 EAYNSLMKSYVSEKDVTSAKALYEHLTAKNTKLDD 1355 PF01535.11.fs: domain 10 of 10, from 1321 to 1355: score 18.4, E = 0.00018 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* +Yn+l+++y+ ++++ A l+e + k+ k d+ hj03737 1321 EAYNSLMKSYVSEKDVTSAKALYEHLTAKNTKLDD 1355 //