hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-16505766/chunk_1/iprscan-20090416-16505766.nocrc
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Query sequence: hj03737
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00756 PPR: pentatricopeptide repeat domain           136.7    2.1e-38  11

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00756   2/11    165   199 ..     1    35 []     7.3     0.68
TIGR00756   3/11    200   234 ..     1    35 []    21.3   0.0012
TIGR00756   4/11    235   269 ..     1    35 []    25.4  6.5e-05
TIGR00756   5/11    270   304 ..     1    35 []    15.7    0.055
TIGR00756   8/11    751   785 ..     1    35 []    17.2     0.02
TIGR00756   9/11    958   992 ..     1    35 []    14.4    0.084
TIGR00756  11/11   1321  1355 ..     1    35 []    24.5  0.00013

Alignments of top-scoring domains:
TIGR00756: domain 2 of 11, from 165 to 199: score 7.3, E = 0.68
                   *->vtYntlidglckagrveeAlelfdeMkerGikPdv<-*
                        Yn+l++++ ++       +++ +M+e++i+P+    
     hj03737   165    SHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNR    199  

TIGR00756: domain 3 of 11, from 200 to 234: score 21.3, E = 0.0012
                   *->vtYntlidglckagrveeAlelfdeMkerGikPdv<-*
                      vtY  li ++c  g++e A +++  Mk +++ +++   
     hj03737   200    VTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTE    234  

TIGR00756: domain 4 of 11, from 235 to 269: score 25.4, E = 6.5e-05
                   *->vtYntlidglckagrveeAlelfdeMkerGikPdv<-*
                       ++++l+ g+++ag++e A+ ++  M+++Gi+P     
     hj03737   235    AVFSALVTGHARAGDMENAENILTVMRDAGIEPGP    269  

TIGR00756: domain 5 of 11, from 270 to 304: score 15.7, E = 0.055
                   *->vtYntlidglckagrveeAlelfdeMkerGikPdv<-*
                       tY +l++++++ g+++++++ +++ +++ + +     
     hj03737   270    DTYLALLNAYAEKGDIDHVKQTLEKVEKSELHLMD    304  

TIGR00756: domain 8 of 11, from 751 to 785: score 17.2, E = 0.02
                   *->vtYntlidglckagrveeAlelfdeMkerGikPdv<-*
                        Y  l+++l+k+g++++A+ +++eMke+++ +     
     hj03737   751    GKYVGLVRVLAKHGKLQDAINILKEMKEKDVLIKD    785  

TIGR00756: domain 9 of 11, from 958 to 992: score 14.4, E = 0.084
                   *->vtYntlidglckagrveeAlelfdeMkerGikPdv<-*
                       +Y  l++ +  +g++++A +++++++e+++ P +   
     hj03737   958    QMYYNLLKLYKINGDWQRADAVWNKIQEENVIPRE    992  

TIGR00756: domain 11 of 11, from 1321 to 1355: score 24.5, E = 0.00013
                   *->vtYntlidglckagrveeAlelfdeMkerGikPdv<-*
                      ++Yn+l+++++ +++v  A++l++ + +++ k+d    
     hj03737  1321    EAYNSLMKSYVSEKDVTSAKALYEHLTAKNTKLDD    1355 

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