# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohj03766.fasta.nr -Q hj03766.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hj03766, 67 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6840927 sequences Expectation_n fit: rho(ln(x))= 4.6179+/-0.000179; mu= 5.3991+/- 0.010 mean_var=49.9133+/- 9.995, 0's: 56 Z-trim: 72 B-trim: 2799 in 1/65 Lambda= 0.181537 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087622|dbj|BAD92258.1| BM-010 variant [Homo s ( 67) 480 132.2 5e-30 gi|74003454|ref|XP_860356.1| PREDICTED: similar to ( 74) 440 121.7 7.7e-27 gi|149019927|gb|EDL78075.1| eukaryotic translation ( 196) 427 118.5 1.8e-25 gi|74003486|ref|XP_860879.1| PREDICTED: similar to ( 305) 427 118.7 2.7e-25 gi|109052780|ref|XP_001103041.1| PREDICTED: simila ( 330) 427 118.7 2.9e-25 gi|74003484|ref|XP_860851.1| PREDICTED: similar to ( 332) 427 118.7 2.9e-25 gi|74003470|ref|XP_860624.1| PREDICTED: similar to ( 338) 427 118.7 2.9e-25 gi|114590944|ref|XP_001155979.1| PREDICTED: simila ( 351) 427 118.7 3e-25 gi|74003456|ref|XP_860391.1| PREDICTED: similar to ( 360) 427 118.7 3.1e-25 gi|109052771|ref|XP_001102325.1| PREDICTED: simila ( 361) 427 118.7 3.1e-25 gi|26353724|dbj|BAC40492.1| unnamed protein produc ( 362) 427 118.7 3.1e-25 gi|148665241|gb|EDK97657.1| eukaryotic translation ( 367) 427 118.7 3.1e-25 gi|74003488|ref|XP_860915.1| PREDICTED: similar to ( 377) 427 118.7 3.2e-25 gi|109052777|ref|XP_001102692.1| PREDICTED: simila ( 380) 427 118.7 3.2e-25 gi|114590948|ref|XP_001156374.1| PREDICTED: simila ( 394) 427 118.7 3.3e-25 gi|2507330|sp|P10630.2|IF4A2_MOUSE Eukaryotic init ( 407) 427 118.7 3.4e-25 gi|50823|emb|CAA31025.1| unnamed protein product [ ( 407) 427 118.7 3.4e-25 gi|485388|dbj|BAA06336.1| eukaryotic initiation fa ( 407) 427 118.7 3.4e-25 gi|90081060|dbj|BAE90010.1| unnamed protein produc ( 407) 427 118.7 3.4e-25 gi|85792253|gb|ABC84194.1| eukaryotic translation ( 407) 427 118.7 3.4e-25 gi|673433|emb|CAA40268.1| protein synthesis initia ( 408) 427 118.7 3.4e-25 gi|73621052|sp|Q4R4Y9.1|IF4A2_MACFA Eukaryotic ini ( 408) 427 118.7 3.4e-25 gi|57997037|emb|CAI46218.1| hypothetical protein [ ( 95) 420 116.5 3.6e-25 gi|148665243|gb|EDK97659.1| eukaryotic translation ( 96) 420 116.5 3.6e-25 gi|16198386|gb|AAH15842.1| Eukaryotic translation ( 407) 421 117.1 1e-24 gi|114590950|ref|XP_001155683.1| PREDICTED: eukary ( 369) 420 116.9 1.1e-24 gi|82213243|sp|Q8JFP1.1|IF4A2_CHICK Eukaryotic ini ( 407) 417 116.1 2.1e-24 gi|47201178|emb|CAF89463.1| unnamed protein produc ( 156) 396 110.4 4.2e-23 gi|47227923|emb|CAF97552.1| unnamed protein produc ( 366) 396 110.6 8.7e-23 gi|119889178|ref|XP_001252408.1| PREDICTED: hypoth ( 110) 388 108.2 1.4e-22 gi|29169170|gb|AAO66460.1| eukaryotic translation ( 101) 387 107.9 1.5e-22 gi|5081253|gb|AAD39339.1| eukaryotic translation i ( 63) 375 104.7 9e-22 gi|47206108|emb|CAF92273.1| unnamed protein produc ( 215) 377 105.5 1.7e-21 gi|2370593|emb|CAA73168.1| translation initiation ( 413) 379 106.2 2.1e-21 gi|126309196|ref|XP_001369799.1| PREDICTED: simila ( 460) 377 105.7 3.3e-21 gi|156553129|ref|XP_001599839.1| PREDICTED: simila ( 423) 371 104.1 9.2e-21 gi|73966209|ref|XP_851852.1| PREDICTED: similar to ( 406) 370 103.8 1.1e-20 gi|29612461|gb|AAH49427.1| Eukaryotic translation ( 406) 370 103.8 1.1e-20 gi|46329822|gb|AAH68800.1| LOC443739 protein [Xeno ( 406) 369 103.5 1.3e-20 gi|194381880|dbj|BAG64309.1| unnamed protein produ ( 173) 365 102.3 1.3e-20 gi|28278797|gb|AAH45237.1| LOC444845 protein [Xeno ( 404) 368 103.3 1.5e-20 gi|2370591|emb|CAA73167.1| translation initiation ( 406) 368 103.3 1.5e-20 gi|54261694|gb|AAH84468.1| Eukaryotic translation ( 406) 368 103.3 1.5e-20 gi|50603985|gb|AAH77641.1| LOC444845 protein [Xeno ( 406) 368 103.3 1.5e-20 gi|74187427|dbj|BAE36681.1| unnamed protein produc ( 225) 365 102.3 1.6e-20 gi|26374621|dbj|BAB27678.2| unnamed protein produc ( 236) 365 102.4 1.7e-20 gi|29294689|gb|AAH48899.1| Eukaryotic translation ( 406) 367 103.0 1.8e-20 gi|119610572|gb|EAW90166.1| eukaryotic translation ( 313) 365 102.4 2.1e-20 gi|109113114|ref|XP_001109608.1| PREDICTED: simila ( 341) 365 102.4 2.3e-20 gi|109092965|ref|XP_001085431.1| PREDICTED: simila ( 341) 365 102.4 2.3e-20 >>gi|62087622|dbj|BAD92258.1| BM-010 variant [Homo sapie (67 aa) initn: 480 init1: 480 opt: 480 Z-score: 694.3 bits: 132.2 E(): 5e-30 Smith-Waterman score: 480; 100.000% identity (100.000% similar) in 67 aa overlap (1-67:1-67) 10 20 30 40 50 60 hj0376 REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIK 10 20 30 40 50 60 hj0376 GKRNWHF ::::::: gi|620 GKRNWHF >>gi|74003454|ref|XP_860356.1| PREDICTED: similar to euk (74 aa) initn: 440 init1: 440 opt: 440 Z-score: 637.0 bits: 121.7 E(): 7.7e-27 Smith-Waterman score: 440; 100.000% identity (100.000% similar) in 63 aa overlap (1-63:10-72) 10 20 30 40 50 hj0376 REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 MSGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ 10 20 30 40 50 60 60 hj0376 QRAIIPCIKGKRNWHF :::::::::::: gi|740 QRAIIPCIKGKRAS 70 >>gi|149019927|gb|EDL78075.1| eukaryotic translation ini (196 aa) initn: 427 init1: 427 opt: 427 Z-score: 612.3 bits: 118.5 E(): 1.8e-25 Smith-Waterman score: 427; 100.000% identity (100.000% similar) in 61 aa overlap (1-61:10-70) 10 20 30 40 50 hj0376 REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MSGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ 10 20 30 40 50 60 60 hj0376 QRAIIPCIKGKRNWHF :::::::::: gi|149 QRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKV 70 80 90 100 110 120 >>gi|74003486|ref|XP_860879.1| PREDICTED: similar to euk (305 aa) initn: 427 init1: 427 opt: 427 Z-score: 609.4 bits: 118.7 E(): 2.7e-25 Smith-Waterman score: 427; 100.000% identity (100.000% similar) in 61 aa overlap (1-61:10-70) 10 20 30 40 50 hj0376 REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 MSGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ 10 20 30 40 50 60 60 hj0376 QRAIIPCIKGKRNWHF :::::::::: gi|740 QRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKV 70 80 90 100 110 120 >>gi|109052780|ref|XP_001103041.1| PREDICTED: similar to (330 aa) initn: 427 init1: 427 opt: 427 Z-score: 608.8 bits: 118.7 E(): 2.9e-25 Smith-Waterman score: 427; 100.000% identity (100.000% similar) in 61 aa overlap (1-61:10-70) 10 20 30 40 50 hj0376 REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MSGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ 10 20 30 40 50 60 60 hj0376 QRAIIPCIKGKRNWHF :::::::::: gi|109 QRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKV 70 80 90 100 110 120 >>gi|74003484|ref|XP_860851.1| PREDICTED: similar to euk (332 aa) initn: 427 init1: 427 opt: 427 Z-score: 608.8 bits: 118.7 E(): 2.9e-25 Smith-Waterman score: 427; 100.000% identity (100.000% similar) in 61 aa overlap (1-61:10-70) 10 20 30 40 50 hj0376 REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 MSGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ 10 20 30 40 50 60 60 hj0376 QRAIIPCIKGKRNWHF :::::::::: gi|740 QRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKV 70 80 90 100 110 120 >>gi|74003470|ref|XP_860624.1| PREDICTED: similar to euk (338 aa) initn: 427 init1: 427 opt: 427 Z-score: 608.7 bits: 118.7 E(): 2.9e-25 Smith-Waterman score: 427; 100.000% identity (100.000% similar) in 61 aa overlap (1-61:10-70) 10 20 30 40 50 hj0376 REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 MSGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ 10 20 30 40 50 60 60 hj0376 QRAIIPCIKGKRNWHF :::::::::: gi|740 QRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQIQKVILALGDYMGATCH 70 80 90 100 110 120 >>gi|114590944|ref|XP_001155979.1| PREDICTED: similar to (351 aa) initn: 427 init1: 427 opt: 427 Z-score: 608.4 bits: 118.7 E(): 3e-25 Smith-Waterman score: 427; 100.000% identity (100.000% similar) in 61 aa overlap (1-61:10-70) 10 20 30 40 50 hj0376 REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MSGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ 10 20 30 40 50 60 60 hj0376 QRAIIPCIKGKRNWHF :::::::::: gi|114 QRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKV 70 80 90 100 110 120 >>gi|74003456|ref|XP_860391.1| PREDICTED: similar to euk (360 aa) initn: 427 init1: 427 opt: 427 Z-score: 608.3 bits: 118.7 E(): 3.1e-25 Smith-Waterman score: 427; 100.000% identity (100.000% similar) in 61 aa overlap (1-61:10-70) 10 20 30 40 50 hj0376 REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 MSGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ 10 20 30 40 50 60 60 hj0376 QRAIIPCIKGKRNWHF :::::::::: gi|740 QRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKV 70 80 90 100 110 120 >>gi|109052771|ref|XP_001102325.1| PREDICTED: similar to (361 aa) initn: 427 init1: 427 opt: 427 Z-score: 608.3 bits: 118.7 E(): 3.1e-25 Smith-Waterman score: 427; 100.000% identity (100.000% similar) in 61 aa overlap (1-61:10-70) 10 20 30 40 50 hj0376 REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MSGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ 10 20 30 40 50 60 60 hj0376 QRAIIPCIKGKRNWHF :::::::::: gi|109 QRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKV 70 80 90 100 110 120 67 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 15:49:30 2008 done: Tue Aug 12 15:52:45 2008 Total Scan time: 428.060 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]