hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-16044948/chunk_1/iprscan-20080812-16044948.nocrc
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Query sequence: hj03796
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00621.11.fs RhoGEF domain                                  141.4    1.3e-41   1
PF00621.11.ls RhoGEF domain                                  143.2    6.5e-40   1
PF00169.19.fs PH domain                                       45.0      3e-13   1
PF00169.19.ls PH domain                                       47.0    5.9e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00621.11.fs   1/1     201   375 ..     1   207 []   141.4  1.3e-41
PF00621.11.ls   1/1     201   375 ..     1   207 []   143.2  6.5e-40
PF00169.19.fs   1/1     407   498 ..     1    92 []    45.0    3e-13
PF00169.19.ls   1/1     407   498 ..     1    92 []    47.0  5.9e-11

Alignments of top-scoring domains:
PF00621.11.fs: domain 1 of 1, from 201 to 375: score 141.4, E = 1.3e-41
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      v++E++eTE+ Yv+dL+ ++ +y+++  ++      lL+p++++++F
     hj03796   201    VVREIVETERMYVQDLRSIVEDYLLKIIDTP----GLLKPEQVSALF 243  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
                   +Nie iy +++++L+  L+ + s+              +  ++++F e+ 
     hj03796   244 GNIENIYALNSQLLR-DLDSCNSD--------------PVAVASCFVER- 277  

                   aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
                   +  +++Y+ Yc+n+p+++  l+     +++++F+++ +e+ ++       
     hj03796   278 SQEFDIYTQYCNNYPNSVAALTECMRDKQQAKFFRDRQELLQH------- 320  

                   davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
                       l L s+LlkPvqRil+Y+LLL+e+ kh +e  + ++ e  ++a+d 
     hj03796   321 ---SLPLGSYLLKPVQRILKYHLLLQEIAKHFDE--EEDGFEVVEDAIDT 365  

                   lqdlaksiNe<-*
                   +  +a +iN+   
     hj03796   366 MTCVAWYIND    375  

PF00621.11.ls: domain 1 of 1, from 201 to 375: score 143.2, E = 6.5e-40
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      v++E++eTE+ Yv+dL+ ++ +y+++  ++      lL+p++++++F
     hj03796   201    VVREIVETERMYVQDLRSIVEDYLLKIIDTP----GLLKPEQVSALF 243  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
                   +Nie iy +++++L+  L+ + s+              +  ++++F e+ 
     hj03796   244 GNIENIYALNSQLLR-DLDSCNSD--------------PVAVASCFVER- 277  

                   aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
                   +  +++Y+ Yc+n+p+++  l+     +++++F+++ +e+ ++       
     hj03796   278 SQEFDIYTQYCNNYPNSVAALTECMRDKQQAKFFRDRQELLQH------- 320  

                   davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
                       l L s+LlkPvqRil+Y+LLL+e+ kh +e  + ++ e  ++a+d 
     hj03796   321 ---SLPLGSYLLKPVQRILKYHLLLQEIAKHFDE--EEDGFEVVEDAIDT 365  

                   lqdlaksiNe<-*
                   +  +a +iN+   
     hj03796   366 MTCVAWYIND    375  

PF00169.19.fs: domain 1 of 1, from 407 to 498: score 45.0, E = 3e-13
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk..kkpkgsipLs
                      ++ eG +++      + +R f+Lfd++Ll+ k++++++ +kg ip s
     hj03796   407    LVLEGTFRVHR---VRNERTFFLFDKTLLITKKRGdhFVYKGNIPCS 450  

                   giqvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkaiqsair
                   ++ + + ++  +  cF +++  ++++++ +qa++ ee++ W ++i+++i 
     hj03796   451 SLMLIESTR--DSLCFTVTHyKHskQQYSIQAKTVEEKRNWTHHIKRLIL 498  

                   <-*
                      
     hj03796     -     -    

PF00169.19.ls: domain 1 of 1, from 407 to 498: score 47.0, E = 5.9e-11
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk..kkpkgsipLs
                      ++ eG +++      + +R f+Lfd++Ll+ k++++++ +kg ip s
     hj03796   407    LVLEGTFRVHR---VRNERTFFLFDKTLLITKKRGdhFVYKGNIPCS 450  

                   giqvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkaiqsair
                   ++ + + ++  +  cF +++  ++++++ +qa++ ee++ W ++i+++i 
     hj03796   451 SLMLIESTR--DSLCFTVTHyKHskQQYSIQAKTVEEKRNWTHHIKRLIL 498  

                   <-*
                      
     hj03796     -     -    

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