hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-16044948/chunk_1/iprscan-20080812-16044948.nocrc
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Query sequence: hj03796
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 182.5    4.1e-50   1
SM00233                                                  52.4      6e-11   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00325     1/1     201   375 ..     1   211 []   182.5  4.1e-50
SM00233     1/1     407   500 ..     1    82 []    52.4    6e-11

Alignments of top-scoring domains:
SM00325: domain 1 of 1, from 201 to 375: score 182.5, E = 4.1e-50
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      v++E+++TEr YV+dL+ +ve +l  + ++       ll p++v  l
     hj03796   201    VVREIVETERMYVQDLRSIVEDYLLKIIDTPG-----LLKPEQVSAL 242  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   Fg Nie iy +++++L +L  + ++                  +  ++++
     hj03796   243 FG-NIENIYALNSQLLRDLDSCNSD------------------PVAVASC 273  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   F++    ++ f+iY++Yc+n+p++++ l++ m    +++ +kf++ +++ 
     hj03796   274 FVER---SQEFDIYTQYCNNYPNSVAALTECM---RDKQQAKFFRDRQEL 317  

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                    +++      l+L s+L+kPvQR++kY+LLL+e+ kh +++ + +e +++
     hj03796   318 LQHS------LPLGSYLLKPVQRILKYHLLLQEIAKHFDEEEDGFEVVED 361  

                   AleaikelasqvNe<-*
                   A++ ++ +a ++N+   
     hj03796   362 AIDTMTCVAWYIND    375  

SM00233: domain 1 of 1, from 407 to 500: score 52.4, E = 6e-11
                   *->vikeGwLlkkskswkkryfvLfngvLlyyksk....kpkgsipLsgc
                      +++eG+ ++    + +r f+Lf+++Ll++k+++++  +kg ip s++
     hj03796   407    LVLEGTFRVHR-VRNERTFFLFDKTLLITKKRgdhfVYKGNIPCSSL 452  

                   svre.p....cFeivt.dr...tlllqAeseeereeWvealqsaiaka<-
                    + e+++++ cF++++ +++++ + +qA++ ee++ W ++++++i ++  
     hj03796   453 MLIEsTrdslCFTVTHyKHskqQYSIQAKTVEEKRNWTHHIKRLILEN   500  

                   *
                    
     hj03796     -   -    

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