hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-16102656/chunk_1/iprscan-20080812-16102656.nocrc
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Query sequence: hj04180
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00045                                                 306.2    2.4e-87   1
SM00046                                                 227.4    1.2e-63   1
SM00109                                                 133.8    1.9e-35   3
SM00314                                                  97.7    1.4e-24   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00109      1/3      80   127 ..     1    61 []    60.8  1.8e-13
SM00109      2/3     141   187 ..     1    61 []    12.8     0.18
SM00109      3/3     201   253 ..     1    61 []    60.2  2.6e-13
SM00314      1/1     414   513 ..     1   102 []    97.7  1.4e-24
SM00046      1/1     607   734 ..     1   157 []   227.4  1.2e-63
SM00045      1/1     760   912 ..     1   195 []   306.2  2.4e-87

Alignments of top-scoring domains:
SM00109: domain 1 of 3, from 80 to 127: score 60.8, E = 1.8e-13
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f+++t +kptfC++C ++iwg++       g+ C +C+++ H+kC
     hj04180    80    HSFRKVTLtKPTFCHLCSDFIWGLA-------GFLCDVCNFMSHEKC 119  

                   aekvpaqshksglsC<-*
                   +++v         +C   
     hj04180   120 LKHVRI-------PC    127  

SM00109: domain 2 of 3, from 141 to 187: score 12.8, E = 0.18
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H f  r  +k++fC+vCrk +          ++l C++C +  H +C
     hj04180   141    HCFGPRGLhKRKFCAVCRKVLEA--------PALHCEVCELHLHPDC 179  

                   aekvpaqshksglsC<-*
                   ++++ +       +C   
     hj04180   180 VPFACS-------DC    187  

SM00109: domain 3 of 3, from 201 to 253: score 60.2, E = 2.6e-13
                   *->Hkfvfrtf...kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHk
                      H++++r  + +++++C+vCrk++++s+  a    g+rC++C+v +H 
     hj04180   201    HHHHWREGnlpSGARCEVCRKTCGSSDVLA----GVRCEWCGVQAHS 243  

                   kCaekvpaqshksglsC<-*
                    C++ +++        C   
     hj04180   244 LCSAALAP-------EC    253  

SM00314: domain 1 of 1, from 414 to 513: score 97.7, E = 1.4e-24
                   *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd
                      +++vl++y+++l+   +g++y+++rv++++Tar V+ ++l  +++++
     hj04180   414    AQEVLKIYPGWLK---VGVAYVSVRVTPKSTARSVVLEVLPLLGRQA 457  

                   edpeeYvLvevlp.sggkErvLlddenPlqlqklwprdaks.prqsslrF
                   e+pe+++Lvev ++++++ r++l+de+Pl +++ + r+ +s ++ s++rF
     hj04180   458 ESPESFQLVEVAMgCRHVQRTMLMDEQPLLDRLQDIRQ-MSvRQVSQTRF 506  

                   vLrkrdd<-*
                   ++ + +d   
     hj04180   507 YVAESRD    513  

SM00046: domain 1 of 1, from 607 to 734: score 227.4, E = 1.2e-63
                   *->plLVfvNPkSGggqgeellkseskllrkfrelLnprqVfdltktggp
                      plLVfvNPkSGg +g        +ll++fr+lLnp+qVfdlt+ ggp
     hj04180   607    PLLVFVNPKSGGLKGR-------DLLCSFRKLLNPHQVFDLTN-GGP 645  

                   dvglelefrdvpkfkeqsdqkgddrvlvcGGDGTvgwVlnaldkrelplq
                    +gl+l f++vp+f          rvlvcGGDGTvgwVl al++++ +l+
     hj04180   646 LPGLHL-FSQVPCF----------RVLVCGGDGTVGWVLGALEETRYRLA 684  

                   cqvedrefpePPvailPlGTGNdLarvLgwgggydginekllkilkeale
                   c       peP vailPlGTGNdL rvL+wg+gy+g  e + ++l+++  
     hj04180   685 C-------PEPSVAILPLGTGNDLGRVLRWGAGYSG--EDPFSVLLSVD- 724  

                   eadtvkldrW<-*
                   ead v++drW   
     hj04180   725 EADAVLMDRW    734  

SM00045: domain 1 of 1, from 760 to 912: score 306.2, E = 2.4e-87
                   *->iMNNYFSiGvDAkiaLeFHnsREanPekFnSRlkNKlwYfelGtkel
                      +M+NY++iG+DA+ +L+FH++RE++P kF+SRl+NK +Y+++G++++
     hj04180   760    QMSNYCGIGIDAELSLDFHQAREEEPGKFTSRLHNKGVYVRVGLQKI 806  

                   fartcKdLheqIeLecDGvdidlpnkdlslEGIivLNIPSygGGtnLWGe
                     +++++Lh+qI+L++++++++lp    s+EG+i++NIPS+g+G++LWG+
     hj04180   807 --SHSRSLHKQIRLQVERQEVELP----SIEGLIFINIPSWGSGADLWGS 850  

                   PfgskkkravcgifkksftdkedlnfekqsidDgllEVVGvtgamhmaqv
                                       ++d++fek+++dDgllEVVGvtg++ m+qv
     hj04180   851 --------------------DSDTRFEKPRMDDGLLEVVGVTGVVYMGQV 880  

                   rtsiqvglasiilvkllKgrRiaQCsevrlkdtiltkktiPmQVDGEP<-
                       q gl+s        g+RiaQ+s++r+  t+l  k++P+QVDGEP  
     hj04180   881 ----QGGLRS--------GIRIAQGSYFRV--TLL--KATPVQVDGEP   912  

                   *
                    
     hj04180     -   -    

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