# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohj04578.fasta.nr -Q hj04578.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hj04578, 1469 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6818071 sequences Expectation_n fit: rho(ln(x))= 7.6338+/-0.000233; mu= 5.6316+/- 0.013 mean_var=263.8624+/-49.947, 0's: 33 Z-trim: 112 B-trim: 0 in 0/64 Lambda= 0.078956 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087758|dbj|BAD92326.1| nuclear receptor co-re (1469) 9883 1140.7 0 gi|116256453|ref|NP_006303.3| nuclear receptor co- (2524) 9736 1124.2 0 gi|119618854|gb|EAW98448.1| nuclear receptor co-re (2471) 9671 1116.8 0 gi|119618857|gb|EAW98451.1| nuclear receptor co-re (2517) 9671 1116.8 0 gi|12643957|sp|Q9Y618.1|NCOR2_HUMAN Nuclear recept (2517) 9580 1106.5 0 gi|109099209|ref|XP_001102754.1| PREDICTED: nuclea (2527) 9318 1076.6 0 gi|109099211|ref|XP_001102847.1| PREDICTED: nuclea (2520) 9251 1069.0 0 gi|99160033|gb|ABF67538.1| nuclear receptor corepr (2470) 8277 958.0 0 gi|99160008|gb|ABF67537.1| nuclear receptor corepr (2471) 8277 958.0 0 gi|119226235|ref|NP_035554.2| nuclear receptor co- (2507) 8175 946.4 0 gi|148687620|gb|EDL19567.1| nuclear receptor co-re (2500) 6628 770.2 0 gi|148687618|gb|EDL19565.1| nuclear receptor co-re (2468) 6602 767.2 0 gi|149063239|gb|EDM13562.1| nuclear receptor co-re (2472) 6540 760.2 3.7e-216 gi|4454548|gb|AAD20944.1| silencing mediator of re (2473) 6477 753.0 5.3e-214 gi|12643930|sp|Q9WU42.2|NCOR2_MOUSE Nuclear recept (2472) 6471 752.3 8.5e-214 gi|194214407|ref|XP_001915492.1| PREDICTED: simila (2519) 6356 739.2 7.6e-210 gi|4559296|gb|AAD22972.1|AF125671_1 silencing medi (2462) 6305 733.4 4.2e-208 gi|148687619|gb|EDL19566.1| nuclear receptor co-re (2253) 4997 584.3 2.8e-163 gi|116256445|ref|NP_001070729.1| nuclear receptor (2462) 4975 581.9 1.7e-162 gi|119618859|gb|EAW98453.1| nuclear receptor co-re (2507) 4975 581.9 1.7e-162 gi|149063240|gb|EDM13563.1| nuclear receptor co-re (2253) 4954 579.4 8.4e-162 gi|119618855|gb|EAW98449.1| nuclear receptor co-re (2550) 4932 577.0 5.1e-161 gi|62240098|gb|AAX77219.1| SMRTE-tau [Homo sapiens (2461) 4926 576.3 8.1e-161 gi|4559298|gb|AAD22973.1|AF125672_1 silencing medi (2507) 4926 576.3 8.2e-161 gi|4454550|gb|AAD20945.1| silencing mediator of re (2253) 4877 570.7 3.7e-159 gi|109099215|ref|XP_001102669.1| PREDICTED: nuclea (2464) 4865 569.4 1e-158 gi|109099213|ref|XP_001102940.1| PREDICTED: nuclea (2510) 4865 569.4 1e-158 gi|118098434|ref|XP_415107.2| PREDICTED: similar t (2483) 4665 546.6 7.2e-152 gi|73995134|ref|XP_853085.1| PREDICTED: similar to (2589) 4163 489.4 1.2e-134 gi|47213495|emb|CAF91071.1| unnamed protein produc (2585) 3168 376.1 1.6e-100 gi|194674349|ref|XP_618370.4| PREDICTED: similar t ( 875) 3001 356.4 4.4e-95 gi|85541753|sp|Q4KKX4.1|NCOR1_XENTR Nuclear recept (2494) 2905 346.1 1.6e-91 gi|73955940|ref|XP_863704.1| PREDICTED: similar to (2437) 2865 341.5 3.8e-90 gi|3510603|gb|AAC33550.1| nuclear receptor co-repr (2440) 2857 340.6 7.1e-90 gi|47117817|sp|O75376|NCOR1_HUMAN Nuclear receptor (2440) 2855 340.4 8.3e-90 gi|90660172|gb|ABD97345.1| silencing mediator for (2457) 2829 337.4 6.5e-89 gi|194217733|ref|XP_001918424.1| PREDICTED: nuclea (2437) 2828 337.3 7e-89 gi|82104713|sp|Q8QG78.1|NCOR1_XENLA Nuclear recept (2498) 2815 335.9 2e-88 gi|1045655|gb|AAC50236.1| silencing mediator of re (1495) 2799 333.7 5.2e-88 gi|12643781|sp|Q60974|NCOR1_MOUSE Nuclear receptor (2453) 2801 334.2 5.9e-88 gi|148678396|gb|EDL10343.1| nuclear receptor co-re (2452) 2795 333.6 9.5e-88 gi|119624899|gb|EAX04494.1| nuclear receptor co-re (2337) 2789 332.9 1.5e-87 gi|119624901|gb|EAX04496.1| nuclear receptor co-re (1087) 2783 331.7 1.5e-87 gi|119911987|ref|XP_871804.2| PREDICTED: nuclear r (2437) 2789 332.9 1.5e-87 gi|118100324|ref|XP_415843.2| PREDICTED: similar t (2442) 2782 332.1 2.7e-87 gi|73955950|ref|XP_863820.1| PREDICTED: similar to (2333) 2781 331.9 2.8e-87 gi|73955944|ref|XP_536653.2| PREDICTED: similar to (2393) 2781 332.0 2.8e-87 gi|73955952|ref|XP_851485.1| PREDICTED: similar to (2453) 2781 332.0 2.9e-87 gi|32450291|gb|AAH54296.1| LOC398642 protein [Xeno ( 527) 2767 329.5 3.4e-87 gi|149641750|ref|XP_001509215.1| PREDICTED: simila (2449) 2777 331.5 3.9e-87 >>gi|62087758|dbj|BAD92326.1| nuclear receptor co-repres (1469 aa) initn: 9883 init1: 9883 opt: 9883 Z-score: 6096.4 bits: 1140.7 E(): 0 Smith-Waterman score: 9883; 100.000% identity (100.000% similar) in 1469 aa overlap (1-1469:1-1469) 10 20 30 40 50 60 hj0457 LRESLLGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LRESLLGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY 10 20 30 40 50 60 70 80 90 100 110 120 hj0457 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF 70 80 90 100 110 120 130 140 150 160 170 180 hj0457 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL 130 140 150 160 170 180 190 200 210 220 230 240 hj0457 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK 190 200 210 220 230 240 250 260 270 280 290 300 hj0457 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL 250 260 270 280 290 300 310 320 330 340 350 360 hj0457 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK 310 320 330 340 350 360 370 380 390 400 410 420 hj0457 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA 370 380 390 400 410 420 430 440 450 460 470 480 hj0457 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT 430 440 450 460 470 480 490 500 510 520 530 540 hj0457 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE 490 500 510 520 530 540 550 560 570 580 590 600 hj0457 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI 550 560 570 580 590 600 610 620 630 640 650 660 hj0457 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG 610 620 630 640 650 660 670 680 690 700 710 720 hj0457 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED 670 680 690 700 710 720 730 740 750 760 770 780 hj0457 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT 730 740 750 760 770 780 790 800 810 820 830 840 hj0457 GQNGPKPPATLGADGPPPEPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPPVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GQNGPKPPATLGADGPPPEPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPPVV 790 800 810 820 830 840 850 860 870 880 890 900 hj0457 PKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEA 850 860 870 880 890 900 910 920 930 940 950 960 hj0457 AEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRP 910 920 930 940 950 960 970 980 990 1000 1010 1020 hj0457 SLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAPPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAPPPP 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 hj0457 QNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTSGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTSGLP 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 hj0457 FPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISSAKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISSAKH 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 hj0457 PSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQLSP 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 hj0457 RGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITHGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITHGTP 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 hj0457 ADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSKEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSKEDG 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 hj0457 RSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHIRGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHIRGS 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 hj0457 ITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAHEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAHEGL 1390 1400 1410 1420 1430 1440 1450 1460 hj0457 VATVKEAGRSIHEIPREELRHTPELPLAP ::::::::::::::::::::::::::::: gi|620 VATVKEAGRSIHEIPREELRHTPELPLAP 1450 1460 >>gi|116256453|ref|NP_006303.3| nuclear receptor co-repr (2524 aa) initn: 6514 init1: 6514 opt: 9736 Z-score: 6003.4 bits: 1124.2 E(): 0 Smith-Waterman score: 9736; 99.862% identity (99.862% similar) in 1451 aa overlap (19-1469:1-1450) 10 20 30 40 50 60 hj0457 LRESLLGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY :::::::::::::::::::::::::::::::::::::::::: gi|116 MSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY 10 20 30 40 70 80 90 100 110 120 hj0457 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF 50 60 70 80 90 100 130 140 150 160 170 180 hj0457 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL 110 120 130 140 150 160 190 200 210 220 230 240 hj0457 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK 170 180 190 200 210 220 250 260 270 280 290 300 hj0457 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL 230 240 250 260 270 280 310 320 330 340 350 360 hj0457 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK 290 300 310 320 330 340 370 380 390 400 410 420 hj0457 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA 350 360 370 380 390 400 430 440 450 460 470 480 hj0457 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT 410 420 430 440 450 460 490 500 510 520 530 540 hj0457 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE 470 480 490 500 510 520 550 560 570 580 590 600 hj0457 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI 530 540 550 560 570 580 610 620 630 640 650 660 hj0457 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG 590 600 610 620 630 640 670 680 690 700 710 720 hj0457 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED 650 660 670 680 690 700 730 740 750 760 770 780 hj0457 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT 710 720 730 740 750 760 790 800 810 820 830 840 hj0457 GQNGPKPPATLGADGPPPEPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPPVV :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: gi|116 GQNGPKPPATLGADGPPPGPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPPVV 770 780 790 800 810 820 850 860 870 880 890 900 hj0457 PKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 PKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEA 830 840 850 860 870 880 910 920 930 940 950 960 hj0457 AEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 AEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRP 890 900 910 920 930 940 970 980 990 1000 1010 1020 hj0457 SLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAPPPP :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|116 SLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPI-VTKVHEPPREDAAPTKPAPPAPPPP 950 960 970 980 990 1000 1030 1040 1050 1060 1070 1080 hj0457 QNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTSGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 QNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTSGLP 1010 1020 1030 1040 1050 1060 1090 1100 1110 1120 1130 1140 hj0457 FPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISSAKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 FPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISSAKH 1070 1080 1090 1100 1110 1120 1150 1160 1170 1180 1190 1200 hj0457 PSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 PSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQLSP 1130 1140 1150 1160 1170 1180 1210 1220 1230 1240 1250 1260 hj0457 RGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITHGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 RGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITHGTP 1190 1200 1210 1220 1230 1240 1270 1280 1290 1300 1310 1320 hj0457 ADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSKEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 ADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSKEDG 1250 1260 1270 1280 1290 1300 1330 1340 1350 1360 1370 1380 hj0457 RSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHIRGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 RSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHIRGS 1310 1320 1330 1340 1350 1360 1390 1400 1410 1420 1430 1440 hj0457 ITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAHEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 ITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAHEGL 1370 1380 1390 1400 1410 1420 1450 1460 hj0457 VATVKEAGRSIHEIPREELRHTPELPLAP ::::::::::::::::::::::::::::: gi|116 VATVKEAGRSIHEIPREELRHTPELPLAPRPLKEGSITQGTPLKYDTGASTTGSKKHDVR 1430 1440 1450 1460 1470 1480 >>gi|119618854|gb|EAW98448.1| nuclear receptor co-repres (2471 aa) initn: 6903 init1: 6903 opt: 9671 Z-score: 5963.5 bits: 1116.8 E(): 0 Smith-Waterman score: 9671; 99.380% identity (99.380% similar) in 1451 aa overlap (19-1469:1-1443) 10 20 30 40 50 60 hj0457 LRESLLGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY :::::::::::::::::::::::::::::::::::::::::: gi|119 MSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY 10 20 30 40 70 80 90 100 110 120 hj0457 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF 50 60 70 80 90 100 130 140 150 160 170 180 hj0457 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL 110 120 130 140 150 160 190 200 210 220 230 240 hj0457 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK 170 180 190 200 210 220 250 260 270 280 290 300 hj0457 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL 230 240 250 260 270 280 310 320 330 340 350 360 hj0457 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK 290 300 310 320 330 340 370 380 390 400 410 420 hj0457 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA 350 360 370 380 390 400 430 440 450 460 470 480 hj0457 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT 410 420 430 440 450 460 490 500 510 520 530 540 hj0457 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE 470 480 490 500 510 520 550 560 570 580 590 600 hj0457 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI 530 540 550 560 570 580 610 620 630 640 650 660 hj0457 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG 590 600 610 620 630 640 670 680 690 700 710 720 hj0457 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED 650 660 670 680 690 700 730 740 750 760 770 780 hj0457 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT 710 720 730 740 750 760 790 800 810 820 830 840 hj0457 GQNGPKPPATLGADGPPPEPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPPVV :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: gi|119 GQNGPKPPATLGADGPPPGPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPPVV 770 780 790 800 810 820 850 860 870 880 890 900 hj0457 PKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEA 830 840 850 860 870 880 910 920 930 940 950 960 hj0457 AEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRP 890 900 910 920 930 940 970 980 990 1000 1010 1020 hj0457 SLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAPPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAPPPP 950 960 970 980 990 1000 1030 1040 1050 1060 1070 1080 hj0457 QNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTSGLP :::::::::::::::::::::::::::::::: :::::::::::::::::::: gi|119 QNLQPESDAPQQPGSSPRGKSRSPAPPADKEA--------FAAEAQKLPGDPPCWTSGLP 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 hj0457 FPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISSAKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISSAKH 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 hj0457 PSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQLSP 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 hj0457 RGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITHGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITHGTP 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 hj0457 ADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSKEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSKEDG 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 hj0457 RSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHIRGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHIRGS 1300 1310 1320 1330 1340 1350 1390 1400 1410 1420 1430 1440 hj0457 ITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAHEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAHEGL 1360 1370 1380 1390 1400 1410 1450 1460 hj0457 VATVKEAGRSIHEIPREELRHTPELPLAP ::::::::::::::::::::::::::::: gi|119 VATVKEAGRSIHEIPREELRHTPELPLAPRPLKEGSITQGTPLKYDTGASTTGSKKHDVR 1420 1430 1440 1450 1460 1470 >>gi|119618857|gb|EAW98451.1| nuclear receptor co-repres (2517 aa) initn: 6903 init1: 6903 opt: 9671 Z-score: 5963.4 bits: 1116.8 E(): 0 Smith-Waterman score: 9671; 99.380% identity (99.380% similar) in 1451 aa overlap (19-1469:1-1443) 10 20 30 40 50 60 hj0457 LRESLLGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY :::::::::::::::::::::::::::::::::::::::::: gi|119 MSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY 10 20 30 40 70 80 90 100 110 120 hj0457 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF 50 60 70 80 90 100 130 140 150 160 170 180 hj0457 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL 110 120 130 140 150 160 190 200 210 220 230 240 hj0457 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK 170 180 190 200 210 220 250 260 270 280 290 300 hj0457 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL 230 240 250 260 270 280 310 320 330 340 350 360 hj0457 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK 290 300 310 320 330 340 370 380 390 400 410 420 hj0457 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA 350 360 370 380 390 400 430 440 450 460 470 480 hj0457 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT 410 420 430 440 450 460 490 500 510 520 530 540 hj0457 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE 470 480 490 500 510 520 550 560 570 580 590 600 hj0457 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI 530 540 550 560 570 580 610 620 630 640 650 660 hj0457 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG 590 600 610 620 630 640 670 680 690 700 710 720 hj0457 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED 650 660 670 680 690 700 730 740 750 760 770 780 hj0457 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT 710 720 730 740 750 760 790 800 810 820 830 840 hj0457 GQNGPKPPATLGADGPPPEPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPPVV :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: gi|119 GQNGPKPPATLGADGPPPGPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPPVV 770 780 790 800 810 820 850 860 870 880 890 900 hj0457 PKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEA 830 840 850 860 870 880 910 920 930 940 950 960 hj0457 AEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRP 890 900 910 920 930 940 970 980 990 1000 1010 1020 hj0457 SLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAPPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAPPPP 950 960 970 980 990 1000 1030 1040 1050 1060 1070 1080 hj0457 QNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTSGLP :::::::::::::::::::::::::::::::: :::::::::::::::::::: gi|119 QNLQPESDAPQQPGSSPRGKSRSPAPPADKEA--------FAAEAQKLPGDPPCWTSGLP 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 hj0457 FPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISSAKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISSAKH 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 hj0457 PSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQLSP 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 hj0457 RGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITHGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITHGTP 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 hj0457 ADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSKEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSKEDG 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 hj0457 RSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHIRGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHIRGS 1300 1310 1320 1330 1340 1350 1390 1400 1410 1420 1430 1440 hj0457 ITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAHEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAHEGL 1360 1370 1380 1390 1400 1410 1450 1460 hj0457 VATVKEAGRSIHEIPREELRHTPELPLAP ::::::::::::::::::::::::::::: gi|119 VATVKEAGRSIHEIPREELRHTPELPLAPRPLKEGSITQGTPLKYDTGASTTGSKKHDVR 1420 1430 1440 1450 1460 1470 >>gi|12643957|sp|Q9Y618.1|NCOR2_HUMAN Nuclear receptor c (2517 aa) initn: 6812 init1: 6812 opt: 9580 Z-score: 5907.4 bits: 1106.5 E(): 0 Smith-Waterman score: 9580; 98.759% identity (98.897% similar) in 1451 aa overlap (19-1469:1-1443) 10 20 30 40 50 60 hj0457 LRESLLGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY :::::: ::::::::::::::::::::::::::::::::::: gi|126 MSGSTQLVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY 10 20 30 40 70 80 90 100 110 120 hj0457 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF 50 60 70 80 90 100 130 140 150 160 170 180 hj0457 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL 110 120 130 140 150 160 190 200 210 220 230 240 hj0457 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK 170 180 190 200 210 220 250 260 270 280 290 300 hj0457 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL 230 240 250 260 270 280 310 320 330 340 350 360 hj0457 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK ::::::::::::.::::::::::::: ::::::::::::::::::::::::::::::::: gi|126 YFKRRNHARKQWKQKFCQRYDQLMEALEKKVERIENNPRRRAKESKVREYYEKQFPEIRK 290 300 310 320 330 340 370 380 390 400 410 420 hj0457 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA 350 360 370 380 390 400 430 440 450 460 470 480 hj0457 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT 410 420 430 440 450 460 490 500 510 520 530 540 hj0457 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE 470 480 490 500 510 520 550 560 570 580 590 600 hj0457 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI 530 540 550 560 570 580 610 620 630 640 650 660 hj0457 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG 590 600 610 620 630 640 670 680 690 700 710 720 hj0457 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED 650 660 670 680 690 700 730 740 750 760 770 780 hj0457 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT 710 720 730 740 750 760 790 800 810 820 830 840 hj0457 GQNGPKPPATLGADGPPPEPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPPVV :::::::::::::::::: ::::: . :: :::::::::::::::::::::::::::: gi|126 GQNGPKPPATLGADGPPPGPPTPPRRTSRAPIEPTPASEATGAPTPPPAPPSPSAPPPVV 770 780 790 800 810 820 850 860 870 880 890 900 hj0457 PKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 PKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEA 830 840 850 860 870 880 910 920 930 940 950 960 hj0457 AEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 AEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRP 890 900 910 920 930 940 970 980 990 1000 1010 1020 hj0457 SLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAPPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 SLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAPPPP 950 960 970 980 990 1000 1030 1040 1050 1060 1070 1080 hj0457 QNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTSGLP :::::::::::::::::::::::::::::::: :::::::::::::::::::: gi|126 QNLQPESDAPQQPGSSPRGKSRSPAPPADKEA--------FAAEAQKLPGDPPCWTSGLP 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 hj0457 FPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISSAKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 FPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISSAKH 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 hj0457 PSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 PSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQLSP 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 hj0457 RGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITHGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 RGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITHGTP 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 hj0457 ADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSKEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 ADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSKEDG 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 hj0457 RSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHIRGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 RSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHIRGS 1300 1310 1320 1330 1340 1350 1390 1400 1410 1420 1430 1440 hj0457 ITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAHEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 ITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAHEGL 1360 1370 1380 1390 1400 1410 1450 1460 hj0457 VATVKEAGRSIHEIPREELRHTPELPLAP ::::::::::::::::::::::::::::: gi|126 VATVKEAGRSIHEIPREELRHTPELPLAPRPLKEGSITQGTPLKYDTGASTTGSKKHDVR 1420 1430 1440 1450 1460 1470 >>gi|109099209|ref|XP_001102754.1| PREDICTED: nuclear re (2527 aa) initn: 3384 init1: 3384 opt: 9318 Z-score: 5746.0 bits: 1076.6 E(): 0 Smith-Waterman score: 9318; 95.530% identity (98.006% similar) in 1454 aa overlap (19-1469:1-1453) 10 20 30 40 50 60 hj0457 LRESLLGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY :::::::::::::::::::::::::::::::::::::::::: gi|109 MSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY 10 20 30 40 70 80 90 100 110 120 hj0457 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF 50 60 70 80 90 100 130 140 150 160 170 180 hj0457 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL :::::::::::::::::::::::.:::.:::::::::::::::::::::::::::::::: gi|109 IESKRPRLELLPDPLLRPSPLLAAGQPVGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL 110 120 130 140 150 160 190 200 210 220 230 240 hj0457 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK ::::::::::::::::::::::::::::::::::::::::::::::::::: .:::. : gi|109 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPSQPPPLASM 170 180 190 200 210 220 250 260 270 280 290 300 hj0457 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL : ....::. ::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PSHLSRLVWDEHVKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL 230 240 250 260 270 280 310 320 330 340 350 360 hj0457 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK 290 300 310 320 330 340 370 380 390 400 410 420 hj0457 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA 350 360 370 380 390 400 430 440 450 460 470 480 hj0457 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT 410 420 430 440 450 460 490 500 510 520 530 hj0457 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQ-QQQQQQQPMPRSSQEEKD :::::::::::::::::::::::::::::::::.::: : : :::::::::::::::::: gi|109 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQNQQQPQAQPQQQQQQQPMPRSSQEEKD 470 480 490 500 510 520 540 550 560 570 580 590 hj0457 EKEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EKEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGR 530 540 550 560 570 580 600 610 620 630 640 650 hj0457 ITRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMV ::::::::::::::::::::::::::::::::::::::::::::.::. ::. . :: . gi|109 ITRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKALLRPGRHLAPTARSL 590 600 610 620 630 640 660 670 680 690 700 710 hj0457 GSKTVSQCKNFY--FNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPV .: .:: : ..: ::. .:::::::::::::::::::::::::::::::::::.::::: gi|109 SSAAVSICVKLYEIFNHTQRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEETAFPPV 650 660 670 680 690 700 720 730 740 750 760 770 hj0457 VEDEEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|109 VEDEEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPRTEAA 710 720 730 740 750 760 780 790 800 810 820 830 hj0457 KDTGQNGPKPPATLGADGPPPEPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPP ::::::::.:::: ..::::::::::::::::::::::::::::: :::::::::::.:: gi|109 KDTGQNGPQPPATQSTDGPPPEPPTPPPEDIPAPTEPTPASEATGPPTPPPAPPSPSVPP 770 780 790 800 810 820 840 850 860 870 880 890 hj0457 PVVPKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKD :::::::::::.::. ::::::::::::::::::::::::::.::::::.:::::::::: gi|109 PVVPKEEKEEEAAAVSPVEEGEEQKPPAAEELAVDTGKAEEPIKSECTEQAEEGPAKGKD 830 840 850 860 870 880 900 910 920 930 940 950 hj0457 AEAAEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLS :::.::::::::::::::::::::::::.:::::::::::::::::::: :::::::::: gi|109 AEASEATAEGALKAEKKEGGSGRATTAKGSGAPQDSDSSATCSADEVDEPEGGDKNRLLS 890 900 910 920 930 940 960 970 980 990 1000 1010 hj0457 PRPSLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PRPSLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAP 950 960 970 980 990 1000 1020 1030 1040 1050 1060 1070 hj0457 PPPQNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTS ::::.:::::::::::::::::::::::: :::: ::::::::::::::::::::::::: gi|109 PPPQHLQPESDAPQQPGSSPRGKSRSPAPAADKE-EKPVFFPAFAAEAQKLPGDPPCWTS 1010 1020 1030 1040 1050 1060 1080 1090 1100 1110 1120 1130 hj0457 GLPFPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GLPFPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISS 1070 1080 1090 1100 1110 1120 1140 1150 1160 1170 1180 1190 hj0457 AKHPSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AKHPSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQ 1130 1140 1150 1160 1170 1180 1200 1210 1220 1230 1240 1250 hj0457 LSPRGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LSPRGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITH 1190 1200 1210 1220 1230 1240 1260 1270 1280 1290 1300 1310 hj0457 GTPADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSK ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|109 GTPADVLYKGTITRIIGEDSPSRLDRSREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSK 1250 1260 1270 1280 1290 1300 1320 1330 1340 1350 1360 1370 hj0457 EDGRSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHI ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|109 EDGRSSSGPPHETAAPKRTYDMMEGRVGRAISSAGIEGLMGRAIPPERHSPHHLKEQHHI 1310 1320 1330 1340 1350 1360 1380 1390 1400 1410 1420 1430 hj0457 RGSITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAH :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::: gi|109 RGSITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPPRDLTEAYKTQALGPLKLKPAH 1370 1380 1390 1400 1410 1420 1440 1450 1460 hj0457 EGLVATVKEAGRSIHEIPREELRHTPELPLAP :::::::::::::::::::::::::::::::: gi|109 EGLVATVKEAGRSIHEIPREELRHTPELPLAPRPLKEGSITQGTPLKYDTGTSTTGSKKH 1430 1440 1450 1460 1470 1480 gi|109 DVRSLIGSPGRTFPPVHPLDVMADARALERACYEESLKSRPGTAGSSGGSIARGAPVIVP 1490 1500 1510 1520 1530 1540 >>gi|109099211|ref|XP_001102847.1| PREDICTED: nuclear re (2520 aa) initn: 3384 init1: 3384 opt: 9251 Z-score: 5704.8 bits: 1069.0 E(): 0 Smith-Waterman score: 9251; 95.048% identity (97.524% similar) in 1454 aa overlap (19-1469:1-1446) 10 20 30 40 50 60 hj0457 LRESLLGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY :::::::::::::::::::::::::::::::::::::::::: gi|109 MSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY 10 20 30 40 70 80 90 100 110 120 hj0457 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF 50 60 70 80 90 100 130 140 150 160 170 180 hj0457 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL :::::::::::::::::::::::.:::.:::::::::::::::::::::::::::::::: gi|109 IESKRPRLELLPDPLLRPSPLLAAGQPVGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL 110 120 130 140 150 160 190 200 210 220 230 240 hj0457 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK ::::::::::::::::::::::::::::::::::::::::::::::::::: .:::. : gi|109 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPSQPPPLASM 170 180 190 200 210 220 250 260 270 280 290 300 hj0457 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL : ....::. ::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PSHLSRLVWDEHVKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL 230 240 250 260 270 280 310 320 330 340 350 360 hj0457 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK 290 300 310 320 330 340 370 380 390 400 410 420 hj0457 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA 350 360 370 380 390 400 430 440 450 460 470 480 hj0457 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT 410 420 430 440 450 460 490 500 510 520 530 hj0457 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQ-QQQQQQQPMPRSSQEEKD :::::::::::::::::::::::::::::::::.::: : : :::::::::::::::::: gi|109 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQNQQQPQAQPQQQQQQQPMPRSSQEEKD 470 480 490 500 510 520 540 550 560 570 580 590 hj0457 EKEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EKEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGR 530 540 550 560 570 580 600 610 620 630 640 650 hj0457 ITRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMV ::::::::::::::::::::::::::::::::::::::::::::.::. ::. . :: . gi|109 ITRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKALLRPGRHLAPTARSL 590 600 610 620 630 640 660 670 680 690 700 710 hj0457 GSKTVSQCKNFY--FNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPV .: .:: : ..: ::. .:::::::::::::::::::::::::::::::::::.::::: gi|109 SSAAVSICVKLYEIFNHTQRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEETAFPPV 650 660 670 680 690 700 720 730 740 750 760 770 hj0457 VEDEEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|109 VEDEEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPRTEAA 710 720 730 740 750 760 780 790 800 810 820 830 hj0457 KDTGQNGPKPPATLGADGPPPEPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPP ::::::::.:::: ..::::::::::::::::::::::::::::: :::::::::::.:: gi|109 KDTGQNGPQPPATQSTDGPPPEPPTPPPEDIPAPTEPTPASEATGPPTPPPAPPSPSVPP 770 780 790 800 810 820 840 850 860 870 880 890 hj0457 PVVPKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKD :::::::::::.::. ::::::::::::::::::::::::::.::::::.:::::::::: gi|109 PVVPKEEKEEEAAAVSPVEEGEEQKPPAAEELAVDTGKAEEPIKSECTEQAEEGPAKGKD 830 840 850 860 870 880 900 910 920 930 940 950 hj0457 AEAAEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLS :::.::::::::::::::::::::::::.:::::::::::::::::::: :::::::::: gi|109 AEASEATAEGALKAEKKEGGSGRATTAKGSGAPQDSDSSATCSADEVDEPEGGDKNRLLS 890 900 910 920 930 940 960 970 980 990 1000 1010 hj0457 PRPSLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PRPSLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAP 950 960 970 980 990 1000 1020 1030 1040 1050 1060 1070 hj0457 PPPQNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTS ::::.:::::::::::::::::::::::: ::::: ::::::::::::::::: gi|109 PPPQHLQPESDAPQQPGSSPRGKSRSPAPAADKEA--------FAAEAQKLPGDPPCWTS 1010 1020 1030 1040 1050 1080 1090 1100 1110 1120 1130 hj0457 GLPFPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GLPFPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNPPPLISS 1060 1070 1080 1090 1100 1110 1140 1150 1160 1170 1180 1190 hj0457 AKHPSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AKHPSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKKLAPFSGVKQEQ 1120 1130 1140 1150 1160 1170 1200 1210 1220 1230 1240 1250 hj0457 LSPRGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LSPRGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSDSAITYRGSITH 1180 1190 1200 1210 1220 1230 1260 1270 1280 1290 1300 1310 hj0457 GTPADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSK ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|109 GTPADVLYKGTITRIIGEDSPSRLDRSREDSLPKGHVIYEGKKGHVLSYEGGMSVTQCSK 1240 1250 1260 1270 1280 1290 1320 1330 1340 1350 1360 1370 hj0457 EDGRSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERHSPHHLKEQHHI ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|109 EDGRSSSGPPHETAAPKRTYDMMEGRVGRAISSAGIEGLMGRAIPPERHSPHHLKEQHHI 1300 1310 1320 1330 1340 1350 1380 1390 1400 1410 1420 1430 hj0457 RGSITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKTQALGPLKLKPAH :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::: gi|109 RGSITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPPRDLTEAYKTQALGPLKLKPAH 1360 1370 1380 1390 1400 1410 1440 1450 1460 hj0457 EGLVATVKEAGRSIHEIPREELRHTPELPLAP :::::::::::::::::::::::::::::::: gi|109 EGLVATVKEAGRSIHEIPREELRHTPELPLAPRPLKEGSITQGTPLKYDTGTSTTGSKKH 1420 1430 1440 1450 1460 1470 gi|109 DVRSLIGSPGRTFPPVHPLDVMADARALERACYEESLKSRPGTAGSSGGSIARGAPVIVP 1480 1490 1500 1510 1520 1530 >>gi|99160033|gb|ABF67538.1| nuclear receptor corepresso (2470 aa) initn: 3656 init1: 3381 opt: 8277 Z-score: 5105.3 bits: 958.0 E(): 0 Smith-Waterman score: 8830; 90.402% identity (95.099% similar) in 1469 aa overlap (19-1469:1-1449) 10 20 30 40 50 60 hj0457 LRESLLGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY ::::::::::::::::::::::..:::::::: ::::::::: gi|991 MSGSTQPVAQTWRATEPRYPPHGISYPVQIARPHTDVGLLEY 10 20 30 40 70 80 90 100 110 120 hj0457 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF :::::::.:::::::::::::::::::::::::::::::::::::::.::::::.::::: gi|991 QHHSRDYTSHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHAYLPELGQSEMEF 50 60 70 80 90 100 130 140 150 160 170 180 hj0457 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL .:::::::::: :::::::::::.:::.:::::.:::::::::::::::::::.:::::: gi|991 LESKRPRLELLSDPLLRPSPLLAAGQPGGSEDLSKDRSLTGKLEPVSPPSPPHVDPELEL 110 120 130 140 150 160 190 200 210 220 230 240 hj0457 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|991 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK 170 180 190 200 210 220 250 260 270 280 290 300 hj0457 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|991 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL 230 240 250 260 270 280 310 320 330 340 350 360 hj0457 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|991 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK 290 300 310 320 330 340 370 380 390 400 410 420 hj0457 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|991 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA 350 360 370 380 390 400 430 440 450 460 470 480 hj0457 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: gi|991 DQQRIKFINMNGLMDDPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT 410 420 430 440 450 460 490 500 510 520 530 540 hj0457 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE :::::::::::::::::::::::::::::::::::::::::::::: ::::.:::::: gi|991 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQ---MPRSNQEEKDE 470 480 490 500 510 550 560 570 580 590 600 hj0457 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI ::::::::::::::.::::::.:.:::.:::::::::::::::::::::::::::::::: gi|991 KEKEKEAEKEEEKPDVENDKEELIKEKADDTSGEDNDEKEAVASKGRKTANSQGRRKGRI 520 530 540 550 560 570 610 620 630 640 650 660 hj0457 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG ::::::::::::..::::::::::::.::::::::::::::::::::::::::::::::: gi|991 TRSMANEANSEETVTPQQSAELASMEMNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG 580 590 600 610 620 630 670 680 690 700 710 720 hj0457 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|991 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKTPAAASEEAAFPPVVED 640 650 660 670 680 690 730 740 750 760 770 780 hj0457 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT ::::.::::::::::.::::: .:::::::::::::.::::::: gi|991 EEMEVSGVSGNEEEMAEEAEA-----------------AVNNSSDTESIPSPRTEAAKDT 700 710 720 730 740 790 800 810 820 830 hj0457 GQN-GPKPPATLGADGPPPEPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPPV ::: ::::: . :::.:::::::::::: :::::: :: ::.: ::::::::::: :::: gi|991 GQNNGPKPPPAPGADAPPPEPPTPPPEDAPAPTEPDPAPEAAGPPTPPPAPPSPSLPPPV 750 760 770 780 790 800 840 850 860 870 880 890 hj0457 VPKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEP--------VKSECTEEA-EE :::::::::. ::: .:::::::: .:.:::.:.::.::: ::::: ::: :: gi|991 VPKEEKEEEAEAAPSAEEGEEQKPSVAQELAADVGKTEEPGDTPPLEPVKSECKEEAAEE 810 820 830 840 850 860 900 910 920 930 940 hj0457 GPAKGK-DAEA-AEATAEGALKAEKKEGGS--GRATTAKSSGAPQDSDSSATCSADEVDE :: : : .:: :::. :::::.:::::.. :.. :::.:::::::::::::::::::: gi|991 GPDKVKAGTEAVAEAAPEGALKVEKKEGSGPGGKGPTAKGSGAPQDSDSSATCSADEVDE 870 880 890 900 910 920 950 960 970 980 990 1000 hj0457 AEGGDKNRLLSPRPSLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPRED :::::::::::::::::::.: :.::::::::::::::::::::::::::::::::::: gi|991 PEGGDKNRLLSPRPSLLTPTSDARTNASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPRED 930 940 950 960 970 980 1010 1020 1030 1040 1050 1060 hj0457 AAPTKPAPPAPPPPQNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQ .:: :::::::: ::.::::.:.::::..:::::::::.:::.::::::::::::.::.: gi|991 TAPPKPAPPAPPAPQHLQPEGDTPQQPSNSPRGKSRSPVPPAEKEAEKPVFFPAFVAEGQ 990 1000 1010 1020 1030 1040 1070 1080 1090 1100 1110 1120 hj0457 KLPGDPPCWTSGLPFPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPP ::: :: ::::::::::::::::::::::::: :::::::::::::::::.::::::::: gi|991 KLPTDPSCWTSGLPFPVPPREVIKASPHAPDPLAFSYAPPGHPLPLGLHDSARPVLPRPP 1050 1060 1070 1080 1090 1100 1130 1140 1150 1160 1170 1180 hj0457 TISNPPPLISSAKHPSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKK :::::::::::::::::::::.:::::::::::::::::::::::::.:::::: ::::: gi|991 TISNPPPLISSAKHPSVLERQMGAISQGMSVQLHVPYSEHAKAPVGPITMGLPLAMDPKK 1110 1120 1130 1140 1150 1160 1190 1200 1210 1220 1230 1240 hj0457 LAPFSGVKQEQLSPRGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSD :::::::::::::::::::::::::::::::.::::::.::::::::::::.:::::::. gi|991 LAPFSGVKQEQLSPRGQAGPPESLGVPTAQETSVLRGTSLGSVPGGSITKGLPSTRVPSE 1170 1180 1190 1200 1210 1220 1250 1260 1270 1280 1290 1300 hj0457 SAITYRGSITHGTPADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSY : :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|991 SPITYRGSITHGTPADVLYKGTITRIIGEDSPSRLDRGREDGLPKGHVIYEGKKGHVLSY 1230 1240 1250 1260 1270 1280 1310 1320 1330 1340 1350 1360 hj0457 EGGMSVTQCSKEDGRSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERH ::::::.:::::::::::: ::.::::::::::::::.::::::.:::::::::::::: gi|991 EGGMSVSQCSKEDGRSSSGSTHEAAAPKRTYDMMEGRVSRAISSAGIEGLMGRAIPPERH 1290 1300 1310 1320 1330 1340 1370 1380 1390 1400 1410 1420 hj0457 SPHHLKEQHHIRGSITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPS-RDLTEAYKT :::::::::::::::::::::::::::::: :::::::::::::::::: :::.::::. gi|991 SPHHLKEQHHIRGSITQGIPRSYVEAQEDYQRREAKLLKREGTPPPPPPPPRDLAEAYKS 1350 1360 1370 1380 1390 1400 1430 1440 1450 1460 hj0457 ---QALGPLKLKPAHEGLVATVKEAGRSIHEIPREELRHTPELPLAP .::: ::::::::::::::::::::::::::::.: :::::::: gi|991 RPLEALGTLKLKPAHEGLVATVKEAGRSIHEIPREEMRPTPELPLAPRPLKEGSITQGTP 1410 1420 1430 1440 1450 1460 gi|991 LKYDTSTSSTGSKKHDVRSIIGSPGRTFPPVHLLDDTRALERACYEESLKSRPGTVSSSG 1470 1480 1490 1500 1510 1520 >>gi|99160008|gb|ABF67537.1| nuclear receptor corepresso (2471 aa) initn: 3656 init1: 3381 opt: 8277 Z-score: 5105.3 bits: 958.0 E(): 0 Smith-Waterman score: 8830; 90.402% identity (95.099% similar) in 1469 aa overlap (19-1469:1-1449) 10 20 30 40 50 60 hj0457 LRESLLGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY ::::::::::::::::::::::..:::::::: ::::::::: gi|991 MSGSTQPVAQTWRATEPRYPPHGISYPVQIARPHTDVGLLEY 10 20 30 40 70 80 90 100 110 120 hj0457 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF :::::::.:::::::::::::::::::::::::::::::::::::::.::::::.::::: gi|991 QHHSRDYTSHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHAYLPELGQSEMEF 50 60 70 80 90 100 130 140 150 160 170 180 hj0457 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL .:::::::::: :::::::::::.:::.:::::.:::::::::::::::::::.:::::: gi|991 LESKRPRLELLSDPLLRPSPLLAAGQPGGSEDLSKDRSLTGKLEPVSPPSPPHVDPELEL 110 120 130 140 150 160 190 200 210 220 230 240 hj0457 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|991 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK 170 180 190 200 210 220 250 260 270 280 290 300 hj0457 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|991 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL 230 240 250 260 270 280 310 320 330 340 350 360 hj0457 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|991 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK 290 300 310 320 330 340 370 380 390 400 410 420 hj0457 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|991 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA 350 360 370 380 390 400 430 440 450 460 470 480 hj0457 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: gi|991 DQQRIKFINMNGLMDDPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT 410 420 430 440 450 460 490 500 510 520 530 540 hj0457 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE :::::::::::::::::::::::::::::::::::::::::::::: ::::.:::::: gi|991 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQ---MPRSNQEEKDE 470 480 490 500 510 550 560 570 580 590 600 hj0457 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI ::::::::::::::.::::::.:.:::.:::::::::::::::::::::::::::::::: gi|991 KEKEKEAEKEEEKPDVENDKEELIKEKADDTSGEDNDEKEAVASKGRKTANSQGRRKGRI 520 530 540 550 560 570 610 620 630 640 650 660 hj0457 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG ::::::::::::..::::::::::::.::::::::::::::::::::::::::::::::: gi|991 TRSMANEANSEETVTPQQSAELASMEMNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG 580 590 600 610 620 630 670 680 690 700 710 720 hj0457 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|991 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKTPAAASEEAAFPPVVED 640 650 660 670 680 690 730 740 750 760 770 780 hj0457 EEMEASGVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDT ::::.::::::::::.::::: .:::::::::::::.::::::: gi|991 EEMEVSGVSGNEEEMAEEAEA-----------------AVNNSSDTESIPSPRTEAAKDT 700 710 720 730 740 790 800 810 820 830 hj0457 GQN-GPKPPATLGADGPPPEPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPPV ::: ::::: . :::.:::::::::::: :::::: :: ::.: ::::::::::: :::: gi|991 GQNNGPKPPPAPGADAPPPEPPTPPPEDAPAPTEPDPAPEAAGPPTPPPAPPSPSLPPPV 750 760 770 780 790 800 840 850 860 870 880 890 hj0457 VPKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEP--------VKSECTEEA-EE :::::::::. ::: .:::::::: .:.:::.:.::.::: ::::: ::: :: gi|991 VPKEEKEEEAEAAPSAEEGEEQKPSVAQELAADVGKTEEPGDTPPLEPVKSECKEEAAEE 810 820 830 840 850 860 900 910 920 930 940 hj0457 GPAKGK-DAEA-AEATAEGALKAEKKEGGS--GRATTAKSSGAPQDSDSSATCSADEVDE :: : : .:: :::. :::::.:::::.. :.. :::.:::::::::::::::::::: gi|991 GPDKVKAGTEAVAEAAPEGALKVEKKEGSGPGGKGPTAKGSGAPQDSDSSATCSADEVDE 870 880 890 900 910 920 950 960 970 980 990 1000 hj0457 AEGGDKNRLLSPRPSLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPRED :::::::::::::::::::.: :.::::::::::::::::::::::::::::::::::: gi|991 PEGGDKNRLLSPRPSLLTPTSDARTNASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPRED 930 940 950 960 970 980 1010 1020 1030 1040 1050 1060 hj0457 AAPTKPAPPAPPPPQNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQ .:: :::::::: ::.::::.:.::::..:::::::::.:::.::::::::::::.::.: gi|991 TAPPKPAPPAPPAPQHLQPEGDTPQQPSNSPRGKSRSPVPPAEKEAEKPVFFPAFVAEGQ 990 1000 1010 1020 1030 1040 1070 1080 1090 1100 1110 1120 hj0457 KLPGDPPCWTSGLPFPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPP ::: :: ::::::::::::::::::::::::: :::::::::::::::::.::::::::: gi|991 KLPTDPSCWTSGLPFPVPPREVIKASPHAPDPLAFSYAPPGHPLPLGLHDSARPVLPRPP 1050 1060 1070 1080 1090 1100 1130 1140 1150 1160 1170 1180 hj0457 TISNPPPLISSAKHPSVLERQIGAISQGMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPKK :::::::::::::::::::::.:::::::::::::::::::::::::.:::::: ::::: gi|991 TISNPPPLISSAKHPSVLERQMGAISQGMSVQLHVPYSEHAKAPVGPITMGLPLAMDPKK 1110 1120 1130 1140 1150 1160 1190 1200 1210 1220 1230 1240 hj0457 LAPFSGVKQEQLSPRGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPSD :::::::::::::::::::::::::::::::.::::::.::::::::::::.:::::::. gi|991 LAPFSGVKQEQLSPRGQAGPPESLGVPTAQETSVLRGTSLGSVPGGSITKGLPSTRVPSE 1170 1180 1190 1200 1210 1220 1250 1260 1270 1280 1290 1300 hj0457 SAITYRGSITHGTPADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLSY : :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|991 SPITYRGSITHGTPADVLYKGTITRIIGEDSPSRLDRGREDGLPKGHVIYEGKKGHVLSY 1230 1240 1250 1260 1270 1280 1310 1320 1330 1340 1350 1360 hj0457 EGGMSVTQCSKEDGRSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPERH ::::::.:::::::::::: ::.::::::::::::::.::::::.:::::::::::::: gi|991 EGGMSVSQCSKEDGRSSSGSTHEAAAPKRTYDMMEGRVSRAISSAGIEGLMGRAIPPERH 1290 1300 1310 1320 1330 1340 1370 1380 1390 1400 1410 1420 hj0457 SPHHLKEQHHIRGSITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPS-RDLTEAYKT :::::::::::::::::::::::::::::: :::::::::::::::::: :::.::::. gi|991 SPHHLKEQHHIRGSITQGIPRSYVEAQEDYQRREAKLLKREGTPPPPPPPPRDLAEAYKS 1350 1360 1370 1380 1390 1400 1430 1440 1450 1460 hj0457 ---QALGPLKLKPAHEGLVATVKEAGRSIHEIPREELRHTPELPLAP .::: ::::::::::::::::::::::::::::.: :::::::: gi|991 RPLEALGTLKLKPAHEGLVATVKEAGRSIHEIPREEMRPTPELPLAPRPLKEGSITQGTP 1410 1420 1430 1440 1450 1460 gi|991 LKYDTSTSSTGSKKHDVRSIIGSPGRTFPPVHLLDDTRALERACYEESLKSRPGTVSSSG 1470 1480 1490 1500 1510 1520 >>gi|119226235|ref|NP_035554.2| nuclear receptor co-repr (2507 aa) initn: 5017 init1: 3333 opt: 8175 Z-score: 5042.4 bits: 946.4 E(): 0 Smith-Waterman score: 8192; 84.615% identity (93.329% similar) in 1469 aa overlap (19-1469:1-1448) 10 20 30 40 50 60 hj0457 LRESLLGPGSSSPPTPTTMSGSTQPVAQTWRATEPRYPPHSLSYPVQIARTHTDVGLLEY ::::::::::::::.:::::::..::::::::.::::::::: gi|119 MSGSTQPVAQTWRAAEPRYPPHGISYPVQIARSHTDVGLLEY 10 20 30 40 70 80 90 100 110 120 hj0457 QHHSRDYASHLSPGSIIQPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEF ::: :::.:::::::::::::::::::::::::.::::::::::::...:::::: ..:: gi|119 QHHPRDYTSHLSPGSIIQPQRRRPSLLSEFQPGSERSQELHLRPESRTFLPELGKPDIEF 50 60 70 80 90 100 130 140 150 160 170 180 hj0457 IESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHTDPELEL :::::::::::: :::::::::::::.:::::::::::.:::::::::::::.:::::: gi|119 TESKRPRLELLPDTLLRPSPLLATGQPSGSEDLTKDRSLAGKLEPVSPPSPPHADPELEL 110 120 130 140 150 160 190 200 210 220 230 240 hj0457 VPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK .: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 APSRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESK 170 180 190 200 210 220 250 260 270 280 290 300 hj0457 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKINQAMRKKLIL 230 240 250 260 270 280 310 320 330 340 350 360 hj0457 YFKRRNHARKQWEQKFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|119 YFKRRNHARKQWEQRFCQRYDQLMEAWEKKVERIENNPRRRAKESKVREYYEKQFPEIRK 290 300 310 320 330 340 370 380 390 400 410 420 hj0457 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQMRQLAVIPPMLYDA 350 360 370 380 390 400 430 440 450 460 470 480 hj0457 DQQRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKT :::::::::::::: ::::::::::: :::::::..:::::::::::::::::::::::: gi|119 DQQRIKFINMNGLMDDPMKVYKDRQVTNMWSEQERDTFREKFMQHPKNFGLIASFLERKT 410 420 430 440 450 460 490 500 510 520 530 540 hj0457 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDE ::::::::::::::::::::::::::::::::::::::::::::: : :::::::.: gi|119 VAECVLYYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQ----MARSSQEEKEE 470 480 490 500 510 550 560 570 580 590 600 hj0457 KEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI :::::::.::::: ..::.::.: :::::::::::::::::::::::::::::::::::: gi|119 KEKEKEADKEEEKQDAENEKEELSKEKTDDTSGEDNDEKEAVASKGRKTANSQGRRKGRI 520 530 540 550 560 570 610 620 630 640 650 660 hj0457 TRSMANEANSEEAITPQQSAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG ::::::::: ::. :::::.::::::.::::::::::::::::::::::::::::::::: gi|119 TRSMANEANHEETATPQQSSELASMEMNESSRWTEEEMETAKKGLLEHGRNWSAIARMVG 580 590 600 610 620 630 670 680 690 700 710 720 hj0457 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKAPAAASEEAAFPPVVED :::::::::::::::::::::::::::::::::::::::::::.:::::::.::::..:: gi|119 SKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERNARRKKKKTPAAASEETAFPPAAED 640 650 660 670 680 690 730 740 750 760 770 hj0457 EEMEASGVSGNEEEMVEEAEALHASGNEVPR-GECSGPATVNNSSDTESIPSPHTEAAKD :::::::.:.::::..::::: .:::::::: :::::::.:::::::::.:::..::.:: gi|119 EEMEASGASANEEELAEEAEASQASGNEVPRVGECSGPAAVNNSSDTESVPSPRSEATKD 700 710 720 730 740 750 780 790 800 810 820 830 hj0457 TGQNGPKPPATLGADGPPPEPPTPPPEDIPA--PTEPTPASEATGAPTPPPAPPSPSAPP :: ::: .: : .::.::::. :: :.::.:. .:.: :.: :.: ::.::: gi|119 TG---PKPTGTE-ALPAATQPPVPPPEE-PAVAPAEPSPVPDASGPPSPEPSP-SPAAPP 760 770 780 790 800 810 840 850 860 870 880 hj0457 PVVPKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEP---------VKSECTEEA .: :.:.: .: :: .:...::: : : .:.:: ::: :::. ::. gi|119 ATVDKDEQEAPAAPAPQTEDAKEQKSEAEE---IDVGKPEEPEASEEPPESVKSDHKEET 820 830 840 850 860 890 900 910 920 930 940 hj0457 EEGPA-KGKDAEAAEATAEGALKAEKKEGGSGRATT-AKSSGAPQDSDSSATCSADEVDE :: : :.: .:: :...:. ::.: :.:: :.: ..:::: :::::::::::::::: gi|119 EEEPEDKAKGTEAIETVSEAPLKVE--EAGSKAAVTKGSSSGATQDSDSSATCSADEVDE 870 880 890 900 910 920 950 960 970 980 990 1000 hj0457 AEGGDKNRLLSPRPSLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQVTKVHEPPRED :::::.::::::::::::.:::::..::::::::::::::::::::: ::::::::::: gi|119 PEGGDKGRLLSPRPSLLTPAGDPRASTSPQKPLDLKQLKQRAAAIPPI-VTKVHEPPRED 930 940 950 960 970 980 1010 1020 1030 1040 1050 1060 hj0457 AAPTKPAPPAPPPPQNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQ ..: ::.::.::: :.::::.:. :: :.:::::::::.:::.::::::.::::: .:. gi|119 TVPPKPVPPVPPPTQHLQPEGDVSQQSGGSPRGKSRSPVPPAEKEAEKPAFFPAFPTEGP 990 1000 1010 1020 1030 1040 1070 1080 1090 1100 1110 1120 hj0457 KLPGDPPCWTSGLPFPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPP ::: .:: :.::::::.:::::::.:::: :::::::.::::::::::::.::::::::: gi|119 KLPTEPPRWSSGLPFPIPPREVIKTSPHAADPSAFSYTPPGHPLPLGLHDSARPVLPRPP 1050 1060 1070 1080 1090 1100 1130 1140 1150 1160 1170 1180 hj0457 TISNPPPLISSAKHPSVLERQIGAISQ-GMSVQLHVPYSEHAKAPVGPVTMGLPLPMDPK ::::::::::::::.:::::.::::: ::::::.::.:::::::.::.:::::: .::: gi|119 -ISNPPPLISSAKHPGVLERQLGAISQQGMSVQLRVPHSEHAKAPMGPLTMGLPLAVDPK 1110 1120 1130 1140 1150 1160 1190 1200 1210 1220 1230 1240 hj0457 KLAPFSGVKQEQLSPRGQAGPPESLGVPTAQEASVLRGTALGSVPGGSITKGIPSTRVPS ::::::::::::::::::::::::::::::::.::::::::::. .::::::.::::. . gi|119 KLAPFSGVKQEQLSPRGQAGPPESLGVPTAQETSVLRGTALGSATSGSITKGLPSTRA-A 1170 1180 1190 1200 1210 1220 1250 1260 1270 1280 1290 1300 hj0457 DSAITYRGSITHGTPADVLYKGTITRIIGEDSPSRLDRGREDSLPKGHVIYEGKKGHVLS :. .:::::::::::::::::::.::.::::::::::.:::.::::::::::::::::: gi|119 DGP-SYRGSITHGTPADVLYKGTISRIVGEDSPSRLDRAREDTLPKGHVIYEGKKGHVLS 1230 1240 1250 1260 1270 1280 1310 1320 1330 1340 1350 1360 hj0457 YEGGMSVTQCSKEDGRSSSGPPHETAAPKRTYDMMEGRVGRAISSASIEGLMGRAIPPER :::::::.:::::::::::::::::::::::::::::::::...::::::::::::: :. gi|119 YEGGMSVSQCSKEDGRSSSGPPHETAAPKRTYDMMEGRVGRTVTSASIEGLMGRAIP-EQ 1290 1300 1310 1320 1330 1340 1370 1380 1390 1400 1410 1420 hj0457 HSPHHLKEQHHIRGSITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPSRDLTEAYKT :::: ::::::::::::::::::::::::::::::::::::::::::::: :::::.:: gi|119 HSPH-LKEQHHIRGSITQGIPRSYVEAQEDYLRREAKLLKREGTPPPPPPPRDLTETYKP 1350 1360 1370 1380 1390 1400 1430 1440 1450 1460 hj0457 QAL---GPLKLKPAHEGLVATVKEAGRSIHEIPREELRHTPELPLAP . : :::::::.:::.::::::::::::::::::::.:::::::: gi|119 RPLDPLGPLKLKPTHEGVVATVKEAGRSIHEIPREELRRTPELPLAPRPLKEGSITQGTP 1410 1420 1430 1440 1450 1460 gi|119 LKYDSGAPSTGTKKHDVRSIIGSPGRPFPALHPLDIMADARALERACYEESLKSRSGTSS 1470 1480 1490 1500 1510 1520 1469 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 16:25:52 2008 done: Tue Aug 12 16:28:22 2008 Total Scan time: 1264.250 Total Display time: 1.590 Function used was FASTA [version 34.26.5 April 26, 2007]